5 items (Bordetella pertussis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP1833	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica. (377 aa)
	BP1834	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa. (201 aa)
	BP1835	Putative exported protein; No significant database matches. (272 aa)
	alaS	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (874 aa)
	BP1837	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family. (84 aa)

Your Current Organism:

Bordetella pertussis

NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP1833	BP1834	BP1833	BP1834	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	0.984
BP1833	BP1835	BP1833	BP1835	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	Putative exported protein; No significant database matches.	0.746
BP1833	BP1837	BP1833	BP1837	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	0.511
BP1833	alaS	BP1833	BP1836	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.541
BP1834	BP1833	BP1834	BP1833	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	0.984
BP1834	BP1835	BP1834	BP1835	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	Putative exported protein; No significant database matches.	0.857
BP1834	BP1837	BP1834	BP1837	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	0.580
BP1834	alaS	BP1834	BP1836	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.588
BP1835	BP1833	BP1835	BP1833	Putative exported protein; No significant database matches.	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	0.746
BP1835	BP1834	BP1835	BP1834	Putative exported protein; No significant database matches.	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	0.857
BP1835	BP1837	BP1835	BP1837	Putative exported protein; No significant database matches.	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	0.596
BP1835	alaS	BP1835	BP1836	Putative exported protein; No significant database matches.	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.614
BP1837	BP1833	BP1837	BP1833	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	0.511
BP1837	BP1834	BP1837	BP1834	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	0.580
BP1837	BP1835	BP1837	BP1835	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	Putative exported protein; No significant database matches.	0.596
BP1837	alaS	BP1837	BP1836	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.865
alaS	BP1833	BP1836	BP1833	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	Putative general secretion pathway protein (Pseudogene); 11 bp insertion in pertussis relative to parapertussis and bronchiseptica.	0.541
alaS	BP1834	BP1836	BP1834	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	Putative fimbrial protein; Similar to Escherichia coli type IV prepilin PilS TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, 24.49% id in 196 aa, and to Salmonella typhi PilS protein TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, 29.78% id in 188 aa.	0.588
alaS	BP1835	BP1836	BP1835	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	Putative exported protein; No significant database matches.	0.614
alaS	BP1837	BP1836	BP1837	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	Similar to Neisseria meningitidis hypothetical protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1006 TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): 1.6e-10, 45.23% id in 84 aa; Belongs to the sulfur carrier protein TusA family.	0.865