STRINGSTRING
B0177_04310 B0177_04310 B0177_04305 B0177_04305 B0177_04300 B0177_04300 frr frr pyrH pyrH trmFO trmFO GCA_001074155_00688 GCA_001074155_00688 rsmI rsmI yabA yabA B0177_04265 B0177_04265 tmk tmk
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B0177_04310Unannotated protein. (328 aa)
B0177_04305Unannotated protein; Belongs to the UPF0346 family. (71 aa)
B0177_04300Unannotated protein; Belongs to the CvfB family. (284 aa)
frrUnannotated protein; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (185 aa)
pyrHUnannotated protein; Catalyzes the reversible phosphorylation of UMP to UDP. (245 aa)
trmFOUnannotated protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (444 aa)
GCA_001074155_00688Unannotated protein. (317 aa)
rsmIUnannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (292 aa)
yabAUnannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. (105 aa)
B0177_04265Unannotated protein. (294 aa)
tmkUnannotated protein; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (212 aa)
Your Current Organism:
Streptococcus pseudopneumoniae
NCBI taxonomy Id: 257758
Other names: ATCC BAA-960, ATCC:BAA:960, CCUG 49455, CIP 108659, DSM 18670, NCTC 13806, S. pseudopneumoniae, Streptococcus pseudopneumoniae Arbique et al. 2005, strain 0108
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