STRINGSTRING
RPA0915 RPA0915 RPA0916 RPA0916 RPA1726 RPA1726 RPA1727 RPA1727 RPA3031 RPA3031 RPA3032 RPA3032 RPA3034 RPA3034 RPA3217 RPA3217 RPA3218 RPA3218 RPA3219 RPA3219 RPA3221 RPA3221 RPA3222 RPA3222 RPA3223 RPA3223
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPA0915Putative NADPH quinone oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (332 aa)
RPA0916Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (63 aa)
RPA1726Putative oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (338 aa)
RPA1727Hypothetical protein. (245 aa)
RPA3031Possible Acetyltransferase (GNAT) family. (207 aa)
RPA3032Phenylacetic acid degradation-related protein. (132 aa)
RPA3034Unknown protein. (87 aa)
RPA3217Possible branched-chain amino acid transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (402 aa)
RPA3218Protein of unknown function UPF0047. (139 aa)
RPA3219Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL). (656 aa)
RPA3221Heat shock protein HtrA like; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the peptidase S1C family. (463 aa)
RPA3222DUF24, predicted transcriptional regulator, related to MarR family. (158 aa)
RPA3223Putative alginate lyase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (338 aa)
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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