(5 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, and Diguanylate cyclase activity network (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPA1858	Sensor histidine kinase with a PAS domain. (610 aa)
	RPA1938	Sensor histidine kinase, possible pleC. (779 aa)
	RPA1972	Sensor histidine kinase. (532 aa)
	RPA3132	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain. (457 aa)
	RPA3133	Response regulator receiver (CheY-like protein). (121 aa)

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPA1858	RPA1938	Sensor histidine kinase with a PAS domain.	Sensor histidine kinase, possible pleC.	0.468
RPA1858	RPA3132	Sensor histidine kinase with a PAS domain.	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	0.995
RPA1858	RPA3133	Sensor histidine kinase with a PAS domain.	Response regulator receiver (CheY-like protein).	0.997
RPA1938	RPA1858	Sensor histidine kinase, possible pleC.	Sensor histidine kinase with a PAS domain.	0.468
RPA1938	RPA1972	Sensor histidine kinase, possible pleC.	Sensor histidine kinase.	0.933
RPA1938	RPA3132	Sensor histidine kinase, possible pleC.	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	0.976
RPA1938	RPA3133	Sensor histidine kinase, possible pleC.	Response regulator receiver (CheY-like protein).	0.995
RPA1972	RPA1938	Sensor histidine kinase.	Sensor histidine kinase, possible pleC.	0.933
RPA1972	RPA3132	Sensor histidine kinase.	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	0.991
RPA1972	RPA3133	Sensor histidine kinase.	Response regulator receiver (CheY-like protein).	0.996
RPA3132	RPA1858	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	Sensor histidine kinase with a PAS domain.	0.995
RPA3132	RPA1938	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	Sensor histidine kinase, possible pleC.	0.976
RPA3132	RPA1972	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	Sensor histidine kinase.	0.991
RPA3132	RPA3133	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	Response regulator receiver (CheY-like protein).	0.896
RPA3133	RPA1858	Response regulator receiver (CheY-like protein).	Sensor histidine kinase with a PAS domain.	0.997
RPA3133	RPA1938	Response regulator receiver (CheY-like protein).	Sensor histidine kinase, possible pleC.	0.995
RPA3133	RPA1972	Response regulator receiver (CheY-like protein).	Sensor histidine kinase.	0.996
RPA3133	RPA3132	Response regulator receiver (CheY-like protein).	Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.	0.896