STRINGSTRING
RPA1246 RPA1246 RPA0586 RPA0586 RPA0569 RPA0569 RPA4811 RPA4811 RPA4688 RPA4688 cbbF cbbF cbbP cbbP cbbA cbbA cbbM cbbM pucAb pucAb pucBb pucBb RPA3585 RPA3585 pucBd pucBd pucAd pucAd pucBc pucBc pucBa pucBa pucAa pucAa bchE bchE bchJ bchJ RPA1574 RPA1574 cbbS cbbS cbbL cbbL acsF acsF puhA puhA bchL bchL bchB bchB bchN bchN bchF bchF cycA cycA tspO tspO bchP bchP RPA1531 RPA1531 bchG bchG pufM pufM pufL pufL pufA pufA pufB pufB bchZ bchZ bchY bchY bchX bchX crtC crtC bchD bchD bchI bchI RPA1500 RPA1500 pucAe pucAe pucBe pucBe
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPA1246Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (233 aa)
RPA0586Putative PAN2 protein; short shain alcohol dehydrogenase. (297 aa)
RPA0569Conserved hypothetical protein; InterPro IPR002035. (372 aa)
RPA4811Conserved hypothetical protein. (361 aa)
RPA4688Possible inner mitochondrial membrane protein Sco1p. (199 aa)
cbbFFructose-1,6-bisphosphatase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (343 aa)
cbbPPhosphoribulokinase (phosphopentokinase) (PRK); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (291 aa)
cbbAFructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (361 aa)
cbbMRibulose-bisphosphate carboxylase form II; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. (461 aa)
pucAbLight-harvesting protein B-800-850 alpha chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (66 aa)
pucBbLight harvesting protein B-800-850, beta chain B (antenna pigment protein, beta chain B). (51 aa)
RPA3585Hypothetical protein. (170 aa)
pucBdLight-harvesting protein B-800-850 beta chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)
pucAdLight-harvesting protein B-800-850 alpha chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)
pucBcLight-harvesting protein B-800-850 beta chain C; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)
pucBaLight-harvesting protein B-800-850 beta chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (47 aa)
pucAaLight-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)
bchEMg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (565 aa)
bchJPutative 4-vinyl protochlorophyllide reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (220 aa)
RPA1574DUF477. (307 aa)
cbbSRibulose-bisphosphate carboxylase small chain. (140 aa)
cbbLRibulose-bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (485 aa)
acsFConserved unknown protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. (365 aa)
puhAH subunit of photosynthetic reaction center complex; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (255 aa)
bchLProtochlorophyllide reductase iron-sulfur ATP-binding protein BchL; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. (312 aa)
bchBProtochlorophyllide reductase BchB subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (540 aa)
bchNProtochlorophyllide reductase subunit BchN; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (429 aa)
bchFPossible 2-vinyl bacteriochlorophillide hydratase BchF subunit (AB034704). (161 aa)
cycACytochrome c2; Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is found in some non-photosynthetic bacteria. (139 aa)
tspOTryptophan-rich sensory protein. (154 aa)
bchPGeranylgeranyl reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (401 aa)
RPA1531Possible Bch2, light harvesting pigment Major Facilitator Family (MFS) transporter. (438 aa)
bchGGeranylgeranyl bacteriochlorophyll synthase. (297 aa)
pufMPhotosynthetic reaction center M protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (307 aa)
pufLPhotosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (277 aa)
pufALight-harvesting complex 1 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (63 aa)
pufBLight-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (65 aa)
bchZBacteriochlorophyllide reductase subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (482 aa)
bchYBacteriochlorophyllide reductase subunit BchY; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (528 aa)
bchXBacteriochlorophyllide reductase subunit BchX; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the NifH/BchL/ChlL family. (332 aa)
crtCHydroxyneurosporene dehydrogenase. (317 aa)
bchDPutative magnesium chelatase subunit BchD; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. (590 aa)
bchIPutative Mg chelatase subunit Bchl; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. (340 aa)
RPA1500Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (199 aa)
pucAeLight-harvesting protein B-800-850 alpha chain E; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)
pucBeLight-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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