17 items (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pucAd	Light-harvesting protein B-800-850 alpha chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)
	pucBd	Light-harvesting protein B-800-850 beta chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)
	pucAb	Light-harvesting protein B-800-850 alpha chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (66 aa)
	pucBb	Light harvesting protein B-800-850, beta chain B (antenna pigment protein, beta chain B). (51 aa)
	RPA1246	Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (233 aa)
	pucBe	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)
	pucAe	Light-harvesting protein B-800-850 alpha chain E; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)
	RPA1500	Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (199 aa)
	pufB	Light-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (65 aa)
	pufA	Light-harvesting complex 1 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (63 aa)
	pufL	Photosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (277 aa)
	pufM	Photosynthetic reaction center M protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (307 aa)
	puhA	H subunit of photosynthetic reaction center complex; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (255 aa)
	RPA1574	DUF477. (307 aa)
	pucAa	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)
	pucBa	Light-harvesting protein B-800-850 beta chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (47 aa)
	pucBc	Light-harvesting protein B-800-850 beta chain C; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA1246	pufA	RPA1246	RPA1526	Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Light-harvesting complex 1 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.839
RPA1246	pufB	RPA1246	RPA1525	Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Light-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.835
RPA1246	pufL	RPA1246	RPA1527	Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Photosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.826
RPA1246	pufM	RPA1246	RPA1528	Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Photosynthetic reaction center M protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.826
RPA1500	pufA	RPA1500	RPA1526	Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Light-harvesting complex 1 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.843
RPA1500	pufB	RPA1500	RPA1525	Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Light-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.837
RPA1500	pufL	RPA1500	RPA1527	Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Photosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.829
RPA1500	pufM	RPA1500	RPA1528	Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Photosynthetic reaction center M protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.827
pucAa	pucAb	RPA2653	RPA4292	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 alpha chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.900
pucAa	pucAd	RPA2653	RPA3012	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 alpha chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.900
pucAa	pucAe	RPA2653	RPA1492	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 alpha chain E; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.900
pucAa	pucBa	RPA2653	RPA2654	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 beta chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.998
pucAa	pucBb	RPA2653	RPA4291	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light harvesting protein B-800-850, beta chain B (antenna pigment protein, beta chain B).	0.691
pucAa	pucBc	RPA2653	RPA3009	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 beta chain C; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.952
pucAa	pucBd	RPA2653	RPA3013	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 beta chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.952
pucAa	pucBe	RPA2653	RPA1491	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.951
pucAa	pufL	RPA2653	RPA1527	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Photosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.442
pucAa	pufM	RPA2653	RPA1528	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Photosynthetic reaction center M protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.402
pucAb	pucAa	RPA4292	RPA2653	Light-harvesting protein B-800-850 alpha chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.900
pucAb	pucAd	RPA4292	RPA3012	Light-harvesting protein B-800-850 alpha chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 alpha chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.900