STRINGSTRING
badB badB fixG, fixG, RPA0042 RPA0042 hydC hydC RPA0135 RPA0135 acnA acnA sdhB sdhB leuC leuC RPA0251 RPA0251 hemN2 hemN2 nth nth RPA0380 RPA0380 rlmN rlmN miaB miaB RPA0453 RPA0453 RPA0489 RPA0489 gcpE gcpE badF badF badG badG hbaB hbaB hbaD hbaD gltA gltA RPA0679 RPA0679 phnJ phnJ fdsG fdsG fdsB fdsB fdsA fdsA cysH cysH gltB gltB gltD gltD RPA0933 RPA0933 RPA0934 RPA0934 RPA0948 RPA0948 hupU hupU hupS hupS hypD hypD RPA0983 RPA0983 fixG fixG petA petA RPA1017 RPA1017 RPA1033 RPA1033 polN polN RPA1037 RPA1037 nadA nadA glcF glcF queE queE RPA1192 RPA1192 iorA iorA RPA1244 RPA1244 vnfX vnfX vnfH vnfH vnfD vnfD vnfK vnfK RPA1382 RPA1382 anfK anfK anfD anfD anfH anfH ilvD2 ilvD2 RPA1501 RPA1501 bchX bchX bchN bchN bchB bchB bchL bchL RPA1606 RPA1606 hemN1 hemN1 bchE bchE RPA1719 RPA1719 fdxA fdxA ung ung RPA1800 RPA1800 thcC thcC pqqE pqqE RPA1974 RPA1974 moaA moaA RPA2016 RPA2016 bioB bioB RPA2092 RPA2092 RPA2122 RPA2122 ilvD3 ilvD3 ilvD ilvD nifH1 nifH1 nifB2 nifB2 RPA2355 RPA2355 queH queH nifS1 nifS1 sufB sufB RPA2468 RPA2468 RPA2470 RPA2470 RPA2493 RPA2493 kamA kamA lipA2 lipA2 RPA2614 RPA2614 nifH2 nifH2 nifB1 nifB1 nifH3 nifH3 rimO rimO RPA2690 RPA2690 RPA2856 RPA2856 nuoI1 nuoI1 nuoG1 nuoG1 nuoF1 nuoF1 nuoE1 nuoE1 nuoB1 nuoB1 RPA3088 RPA3088 RPA3195 RPA3195 RPA3324 RPA3324 RPA3392 RPA3392 ilvD1 ilvD1 RPA3550 RPA3550 thiC thiC vanA vanA vanB vanB nirA nirA RPA3711 RPA3711 lytB1 lytB1 RPA3735 RPA3735 RPA3748 RPA3748 RPA3764 RPA3764 paaD paaD RPA3803 RPA3803 fumA fumA RPA3956 RPA3956 RPA3999 RPA3999 RPA4213 RPA4213 RPA4231 RPA4231 nuoI2 nuoI2 nuoG2 nuoG2 nuoF2 nuoF2 nuoE2 nuoE2 nuoB2 nuoB2 lytB2 lytB2 mutY mutY RPA4493 RPA4493 RPA4507 RPA4507 fixX fixX nifS2 nifS2 nifU nifU RPA4610 RPA4610 fdxB fdxB nifX nifX nifD nifD nifH4 nifH4 hesB hesB ferN ferN nifB nifB fer1 fer1 bisC bisC coxS, coxS, RPA4721 RPA4721 RPA4722 RPA4722
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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badBFerredoxin. (81 aa)
fixG,4Fe-4S ferredoxin, iron-sulfur binding domain. (485 aa)
RPA0042Possible iron-sulfur cluster binding protein. (370 aa)
hydCHydrogenase gamma-fused hydrogenase large and small subunit. (619 aa)
RPA0135Possible oxidoreductase. (673 aa)
acnAAconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (905 aa)
sdhBSuccinate dehydrogenase iron-sulfur protein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
leuC3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (469 aa)
RPA0251MiaB-like tRNA modifying enzyme. (423 aa)
hemN2Possible oxygen-independent coproporphyrinogen III oxidase (hemN); Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (385 aa)
nthEndonuclease III DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (261 aa)
RPA0380Possible oxidoreductase similar to formate dehydrogenase and cbbBc of R. eutropha; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (770 aa)
rlmNCfr family protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (424 aa)
miaBtRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (463 aa)
RPA0453Possible NifU-like domain (residues 119-187); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (188 aa)
RPA0489Ferredoxin II; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)
gcpE4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (441 aa)
badFbenzoyl-CoA reductase subunit. (437 aa)
badGbenzoyl-CoA reductase subunit. (277 aa)
hbaB4-hydroxybenzoyl-CoA reductase, first of three subunits. (163 aa)
hbaD4-hydroxybenzoyl-CoA reductase, third of three subunits; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (327 aa)
gltAPossible pyridine nucleotide-linked oxidoreductase, possible glutamate synthase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (1035 aa)
RPA0679Protein of unknown function UPF0004:Elongator protein 3/MiaB/NifB. (677 aa)
phnJPhnJ protein, phosphonate metabolism, function unknown; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. (292 aa)
fdsGPutative NAD-dependent formate dehydrogenase gamma subunit. (156 aa)
fdsBNAD-dependent formate dehydrogenase beta subunit. (518 aa)
fdsANAD-dependent formate dehydrogenase alpha subunit. (948 aa)
cysHPutative phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. (246 aa)
gltBGlutamate synthase, large subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (1575 aa)
gltDGlutamate synthase (NADPH) small chain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (484 aa)
RPA0933Putative protease, putative; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (325 aa)
RPA0934Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (306 aa)
RPA0948Possible hypothetical RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (412 aa)
hupUUptake hydrogenase accessory protein hupU. (333 aa)
hupSUptake hydrogenase regulatory protein hupV pseudogene, frameshifted; Authentic frameshift, hupV pseudogene. (370 aa)
hypDHydrogenase expression/formation protein hypD; Belongs to the HypD family. (380 aa)
RPA0983Possible phthalate dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (452 aa)
fixGNitrogen fixation protein fixG, homologous to rdxB of R. sphaeroides; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (480 aa)
petAUbiquinol-cytochrome-c reductase, Rieske iron-sulfur protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (177 aa)
RPA1017Nitrogen fixation-related protein. (130 aa)
RPA1033DUF85:Elongator protein 3/MiaB/NifB. (386 aa)
polNPossible phage DNA polymerases. (276 aa)
RPA1037Possible electron transfer flavoprotein dehydrogenases; Accepts electrons from ETF and reduces ubiquinone. (552 aa)
nadAQuinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. (370 aa)
glcFGlycolate oxidase subunit, (Fe-S)protein, GlcF. (437 aa)
queEConserved hypothetical protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (210 aa)
RPA1192Cytochrome b6-F complex iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (208 aa)
iorAPutative indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (608 aa)
RPA1244Conserved unknown protein. (201 aa)
vnfXPutative vanadium nitrogenase protein. (161 aa)
vnfHNitrogenase iron protein, vnfH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (296 aa)
vnfDNitrogenase vanadium-iron protein alpha chain. (472 aa)
vnfKNitrogenase vanadium-iron protein, VnfK subunit; Belongs to the NifD/NifK/NifE/NifN family. (462 aa)
RPA1382Nitrogen fixation-related protein. (161 aa)
anfKAlternative nitrogenase 3 beta chain; Belongs to the NifD/NifK/NifE/NifN family. (461 aa)
anfDPutative nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase). (522 aa)
anfHNitrogenase iron protein (nitrogenase component II) (nitrogenase reductase); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (275 aa)
ilvD2Dihydroxy-acid dehydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the IlvD/Edd family. (618 aa)
RPA1501Possible coenzyme F420 hydrogenase beta subunit. (409 aa)
bchXBacteriochlorophyllide reductase subunit BchX; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the NifH/BchL/ChlL family. (332 aa)
bchNProtochlorophyllide reductase subunit BchN; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (429 aa)
bchBProtochlorophyllide reductase BchB subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (540 aa)
bchLProtochlorophyllide reductase iron-sulfur ATP-binding protein BchL; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. (312 aa)
RPA1606Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily. (127 aa)
hemN1Putative coproporphyrinogen oxidase III; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (449 aa)
bchEMg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (565 aa)
RPA1719Protein of unknown function UPF0153. (110 aa)
fdxAPutative ferredoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (75 aa)
ungUracil-DNA glycosylase:Phage SPO1 DNA polymerase-related protein. (495 aa)
RPA1800Elongator protein 3/MiaB/NifB. (416 aa)
thcCRhodocoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (106 aa)
pqqEPutative pyrroloquinoline quinone biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). (377 aa)
RPA1974MRP protein(ATP/GTP-binding protein) homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (370 aa)
moaAMolybdenum biosynthetic protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (344 aa)
RPA2016Possible methyltransferase related protein. (652 aa)
bioBBiotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (336 aa)
RPA2092Conserved hypothetical protein; InterPro IPR001450. (378 aa)
RPA2122Putative oxygen independent coproporphyrinogen III oxidase. (486 aa)
ilvD3Dihydroxy-acid dehydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the IlvD/Edd family. (568 aa)
ilvDPutative dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (559 aa)
nifH1Putative nitrogenase NifH subunit; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (291 aa)
nifB2Putative nitrogenase iron-molybdenum cofactor biosynthesis protein NifB. (307 aa)
RPA2355Possible nitrogenase NifB. (127 aa)
queHDUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). (199 aa)
nifS1Putative cysteine desulfurase, nifS homolog. (390 aa)
sufBsufB, needed for fhuF Fe-S center stability. (493 aa)
RPA2468DUF59. (122 aa)
RPA2470Protein of unknown function, HesB/YadR/YfhF; Belongs to the HesB/IscA family. (123 aa)
RPA2493Possible P-methylase. (598 aa)
kamAPutative L-lysine 2,3-aminomutase; Citation: Ruzicka et al. (2000) J. Bact. 182:469-476. (363 aa)
lipA2Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (319 aa)
RPA2614Conserved hypothetical protein. (425 aa)
nifH2Putative nitrogenase iron protein (nitrogenase component II) (nitrogenase reductase); Belongs to the NifH/BchL/ChlL family. (290 aa)
nifB1Putative nitrogenase iron-molybdenum cofactor biosynthesis protein NifB. (298 aa)
nifH3Putative nitrogenase reductase NifH subunit; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (289 aa)
rimOProtein of unknown function UPF0004:Elongator protein 3/MiaB/NifB; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (441 aa)
RPA2690Possible uracil-DNA glycosylase. (224 aa)
RPA2856Protein of unknown function, HesB/YadR/YfhF; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HesB/IscA family. (110 aa)
nuoI1NADH-ubiquinone dehydrogenase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
nuoG1NADH-ubiquinone dehydrogenase chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (694 aa)
nuoF1NADH-ubiquinone dehydrogenase chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (441 aa)
nuoE1NADH-ubiquinone dehydrogenase chain E; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (249 aa)
nuoB1NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (198 aa)
RPA3088Conserved hypothetical protein; COGs COG0327. (130 aa)
RPA3195Related to Pyruvate ferredoxin/flavodoxin oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (1161 aa)
RPA3324Hypothetical protein; InterPro IPR000183. (289 aa)
RPA3392Possible nifU homolog. (150 aa)
ilvD1Dihydroxy-acid dehydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the IlvD/Edd family. (602 aa)
RPA3550Coenzyme B12-binding:Elongator protein 3/MiaB/NifB. (589 aa)
thiCThiamin biosynthesis protein thiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (666 aa)
vanAPutative vanillate O-demethylase oxygenase, iron-sulfur subunit. (347 aa)
vanBPutative vanillate O-demethylase oxidoreductase. (330 aa)
nirAPossible ferredoxin-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (590 aa)
RPA3711Possible sulfite reductase (NADPH). (539 aa)
lytB1Penicillin tolerance protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (306 aa)
RPA3735Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (386 aa)
RPA3748Elongator protein 3/MiaB/NifB. (527 aa)
RPA3764Putative 2Fe:2S ferredoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (362 aa)
paaDPutative phenylacetic acid degradation protein PaaD. (167 aa)
RPA3803Carbon-monoxide dehydrogenase small subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (161 aa)
fumAFumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (551 aa)
RPA3956Ferredoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (106 aa)
RPA3999Possible coenzyme PQQ synthesis protein E. (347 aa)
RPA4213Sulfite reductase hemoprotein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (551 aa)
RPA4231Putative oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (703 aa)
nuoI2NADH-ubiquinone dehydrogenase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (173 aa)
nuoG2NADH-ubiquinone dehydrogenase chain G; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (877 aa)
nuoF2NADH-ubiquinone dehydrogenase chain F. (428 aa)
nuoE2NADH-ubiquinone dehydrogenase chain E. (162 aa)
nuoB2NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (208 aa)
lytB2Penicillin tolerance protein (lytB), control of stringent response; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (320 aa)
mutYAdenine glycosylase mutY; Adenine glycosylase active on G-A mispairs. (349 aa)
RPA4493Conserved unknown protein. (221 aa)
RPA4507Elongator protein 3/MiaB/NifB. (594 aa)
fixXFerredoxin like protein, fixX; Could be a 3Fe-4S cluster-containing protein. (98 aa)
nifS2Nitrogenase cofactor synthesis protein nifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (410 aa)
nifUPutative nifU protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (328 aa)
RPA4610Protein of unknown function, HesB/YadR/YfhF; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HesB/IscA family. (106 aa)
fdxBFerredoxin 2[4Fe-4S] III, fdxB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (103 aa)
nifXNitrogenase molybdenum-iron protein nifX; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (132 aa)
nifDNitrogenase molybdenum-iron protein alpha chain, nifD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (487 aa)
nifH4Nitrogenase iron protein, nifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (298 aa)
hesBProtein of unknown function, HesB/YadR/YfhF; Belongs to the HesB/IscA family. (118 aa)
ferNFerredoxin 2[4Fe-4S], fdxN. (73 aa)
nifBNitrogen fixation protein nifB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (518 aa)
fer1Ferredoxin 2[4Fe-4S], fdxN; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (64 aa)
bisCBiotin sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (769 aa)
coxS,Carbon-monoxide dehydrogenase small subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (156 aa)
RPA4721possible+E2677 pyruvate-flavodoxin oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (1737 aa)
RPA4722Possible glutamate synthase, small subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (944 aa)
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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