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paaC paaC paaA paaA RPA3771 RPA3771 RPA3782 RPA3782 gcvT2 gcvT2 gcvH gcvH gcvP gcvP RPA3922 RPA3922 RPA3974 RPA3974 RPA4231 RPA4231 nuoM2 nuoM2 nuoI2 nuoI2 nuoF2 nuoF2 nuoE2 nuoE2 nuoCD nuoCD pcaC pcaC RPA4721 RPA4721 coxL, coxL, fer1 fer1 nifD nifD nifK nifK nifE nifE nifN nifN nifX nifX fdxB fdxB guaC guaC apt apt glpD glpD nuoB2 nuoB2 RPA0045 RPA0045 hydC hydC sucB sucB sucA sucA sdhA sdhA sdhC sdhC gpdA gpdA badB badB hbaC hbaC hbaD hbaD RPA0677 RPA0677 fdsG fdsG fdsB fdsB fdsA fdsA uraI uraI gltD gltD RPA0908 RPA0908 hupS hupS RPA1092 RPA1092 ndh ndh RPA1311 RPA1311 vnfX vnfX vnfN vnfN vnfE vnfE vnfD vnfD vnfK vnfK RPA1382 RPA1382 anfK anfK anfD anfD norE norE RPA1501 RPA1501 bchB bchB RPA1572 RPA1572 RPA1590 RPA1590 RPA1643 RPA1643 folK folK RPA1957 RPA1957 RPA2194 RPA2194 RPA2347 RPA2347 RPA2348 RPA2348 NifD1 NifD1 RPA2364 RPA2364 RPA2421 RPA2421 msuD msuD RPA2616 RPA2616 RPA2617 RPA2617 NifD2 NifD2 RPA2637 RPA2637 phaD phaD RPA2864 RPA2864 RPA2866 RPA2866 nuoM1 nuoM1 nuoK1 nuoK1 nuoI1 nuoI1 nuoF1 nuoF1 nuoE1 nuoE1 nuoC nuoC nuoB1 nuoB1 nrd nrd RPA3764 RPA3764 paaB paaB
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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paaCPhenylacetic acid degradation protein paaC; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (258 aa)
paaAPhenylacetic acid degradation protein paaA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (327 aa)
RPA3771Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (106 aa)
RPA3782Putative rubredoxin reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (405 aa)
gcvT2Glycine cleavage system protein T2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (382 aa)
gcvHGlycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (121 aa)
gcvPGlycine cleavage system protein P; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (990 aa)
RPA3922Putative acetoin dehydrogenase (TPP-dependent) beta chain. (350 aa)
RPA3974Putative dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (773 aa)
RPA4231Putative oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (703 aa)
nuoM2NADH-ubiquinone dehydrogenase chain M. (480 aa)
nuoI2NADH-ubiquinone dehydrogenase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (173 aa)
nuoF2NADH-ubiquinone dehydrogenase chain F. (428 aa)
nuoE2NADH-ubiquinone dehydrogenase chain E. (162 aa)
nuoCDNADH-ubiquinone dehydrogenase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. (581 aa)
pcaCPutative 4-carboxymuconolactone decarboxylase. (126 aa)
RPA4721possible+E2677 pyruvate-flavodoxin oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (1737 aa)
coxL,Putative carbon-monoxide dehydrogenase large subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (784 aa)
fer1Ferredoxin 2[4Fe-4S], fdxN; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (64 aa)
nifDNitrogenase molybdenum-iron protein alpha chain, nifD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (487 aa)
nifKNitrogenase molybdenum-iron protein beta chain, nifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (519 aa)
nifENitrogenase molybdenum-cofactor synthesis protein nifE; Belongs to the NifD/NifK/NifE/NifN family. (487 aa)
nifNNitrogenase reductase-associated ferredoxin, nifN; Belongs to the NifD/NifK/NifE/NifN family. (457 aa)
nifXNitrogenase molybdenum-iron protein nifX; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (132 aa)
fdxBFerredoxin 2[4Fe-4S] III, fdxB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (103 aa)
guaCGMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides. (354 aa)
aptAdenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (181 aa)
glpDGlycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (511 aa)
nuoB2NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (208 aa)
RPA0045Putative NADH dehydrogenase (ubiquinone) 1 alpha subcomplex; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (321 aa)
hydCHydrogenase gamma-fused hydrogenase large and small subunit. (619 aa)
sucBDihydrolipoamide succinyl transferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (417 aa)
sucAPutative alpha-ketoglutarate dehydrogenase (E1 subunit); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (985 aa)
sdhASuccinate dehydrogenase flavoprotein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (607 aa)
sdhCSuccinate dehydrogenase membrane anchor/cytochrome b subunit. (132 aa)
gpdAPutative glycerol-3-phosphate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (329 aa)
badBFerredoxin. (81 aa)
hbaC4-hydroxybenzoyl-CoA reductase,second of three subunits. (777 aa)
hbaD4-hydroxybenzoyl-CoA reductase, third of three subunits; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (327 aa)
RPA0677Hypothetical protein. (483 aa)
fdsGPutative NAD-dependent formate dehydrogenase gamma subunit. (156 aa)
fdsBNAD-dependent formate dehydrogenase beta subunit. (518 aa)
fdsANAD-dependent formate dehydrogenase alpha subunit. (948 aa)
uraIDihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (364 aa)
gltDGlutamate synthase (NADPH) small chain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (484 aa)
RPA0908Hypothetical protein. (41 aa)
hupSUptake hydrogenase regulatory protein hupV pseudogene, frameshifted; Authentic frameshift, hupV pseudogene. (370 aa)
RPA1092Carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (123 aa)
ndhPutative NADH dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (436 aa)
RPA1311Possible 4-carboxymuconolactone decarboxylase. (110 aa)
vnfXPutative vanadium nitrogenase protein. (161 aa)
vnfNPutative nitrogenase cofactor synthesis protein. (460 aa)
vnfEPutative nitrogenase cofactor synthesis protein; Belongs to the NifD/NifK/NifE/NifN family. (460 aa)
vnfDNitrogenase vanadium-iron protein alpha chain. (472 aa)
vnfKNitrogenase vanadium-iron protein, VnfK subunit; Belongs to the NifD/NifK/NifE/NifN family. (462 aa)
RPA1382Nitrogen fixation-related protein. (161 aa)
anfKAlternative nitrogenase 3 beta chain; Belongs to the NifD/NifK/NifE/NifN family. (461 aa)
anfDPutative nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase). (522 aa)
norEPutative denitrification protein NorE. (202 aa)
RPA1501Possible coenzyme F420 hydrogenase beta subunit. (409 aa)
bchBProtochlorophyllide reductase BchB subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. (540 aa)
RPA1572Putative carbon-monoxide dehydrogenase large subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (776 aa)
RPA1590Conserved hypothetical protein. (258 aa)
RPA1643Possible high affinity iron permease FTR1. (288 aa)
folKPutative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (163 aa)
RPA1957Alkanal monooxygenase (LuxA-like protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (338 aa)
RPA2194Possible carbon-monoxide dehydrogenase large subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (834 aa)
RPA2347Possible vanadium nitrogenase associated protein N (U51863). (463 aa)
RPA2348Possible nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase). (511 aa)
NifD1Possible nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase). (501 aa)
RPA2364Possible nitrogenase iron-molybdenum cofactor biosynthesis protein NifE homolog. (459 aa)
RPA2421NADH:ubiquinone oxidoreductase 17.2 k. (136 aa)
msuDMethanesulfonate sulfonatase MsuD (monooxygenase); Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family. (391 aa)
RPA2616Possible nitrogenase iron-molybdenum cofactor biosynthesis protein NifE homolog. (452 aa)
RPA2617Possible vanadium nitrogenase associated protein vnfN (U51863). (416 aa)
NifD2Possible nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase). (502 aa)
RPA2637Possible nitrogenase iron-molybdenum protein subunit nifK homolog. (460 aa)
phaDPutative component of pH adaptation K-efflux system phaD; Citation: Putkorny et al. (1998) Mol. Microbiol. 28:1091-1101. (544 aa)
RPA2864Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (463 aa)
RPA2866Pyruvate dehydrogenase E1 beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (469 aa)
nuoM1NADH-ubiquinone dehydrogenase chain M. (505 aa)
nuoK1NADH-ubiquinone dehydrogenase chain K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (103 aa)
nuoI1NADH-ubiquinone dehydrogenase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
nuoF1NADH-ubiquinone dehydrogenase chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (441 aa)
nuoE1NADH-ubiquinone dehydrogenase chain E; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (249 aa)
nuoCNADH-ubiquinone dehydrogenase chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (204 aa)
nuoB1NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (198 aa)
nrdRibonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (1257 aa)
RPA3764Putative 2Fe:2S ferredoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (362 aa)
paaBPhenylacetic acid degradation protein paaB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (95 aa)
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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