(16 nodes) PAC motif network (Rhodopseudomonas palustris CGA009)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	RPA3216	Sensor histidine kinase with multiple PAS and a response regulator receiver domain. (686 aa)
	RPA0370	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains. (838 aa)
	RPA0431	Methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (560 aa)
	RPA0754	Putative signal transduction histidine kinase with PAS/PAC domains. (478 aa)
	RPA0914	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (959 aa)
	RPA0981	Sensor histidine kinase with multiple PAS and a response regulator receiver domain. (795 aa)
	RPA1558	Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain. (903 aa)
	RPA1884	Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (559 aa)
	RPA1931	Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (432 aa)
	RPA1938	Sensor histidine kinase, possible pleC. (779 aa)
	RPA2075	Putative signal transduction histidine kinase with GAF and PAS/PAC domains. (633 aa)
	RPA2111	PAS domain:sigma-54-dependent transcriptional regulator, Fis family. (641 aa)
	RPA2787	Putative signal transduction histidine kinase with PAS/PAC domain. (352 aa)
	RPA3170	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains. (873 aa)
	RPA3187	Sensor histidine kinase with a PAS/PAC domain. (917 aa)
	RPA3616	Putative diguanylate cyclase (GGDEF) with PAS/PAC domain. (644 aa)

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPA0370	RPA0914	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.472
RPA0370	RPA0981	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.589
RPA0370	RPA1558	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.	0.759
RPA0370	RPA2075	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Putative signal transduction histidine kinase with GAF and PAS/PAC domains.	0.478
RPA0370	RPA3170	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.	0.662
RPA0370	RPA3216	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.434
RPA0370	RPA3616	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.	0.623
RPA0431	RPA0981	Methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.810
RPA0431	RPA1558	Methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.	0.900
RPA0431	RPA2075	Methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative signal transduction histidine kinase with GAF and PAS/PAC domains.	0.465
RPA0431	RPA3170	Methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.	0.779
RPA0431	RPA3216	Methyl-accepting chemotaxis receptor/sensory transducer with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.623
RPA0754	RPA0981	Putative signal transduction histidine kinase with PAS/PAC domains.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.701
RPA0754	RPA1558	Putative signal transduction histidine kinase with PAS/PAC domains.	Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.	0.616
RPA0754	RPA1938	Putative signal transduction histidine kinase with PAS/PAC domains.	Sensor histidine kinase, possible pleC.	0.687
RPA0754	RPA2075	Putative signal transduction histidine kinase with PAS/PAC domains.	Putative signal transduction histidine kinase with GAF and PAS/PAC domains.	0.504
RPA0754	RPA3170	Putative signal transduction histidine kinase with PAS/PAC domains.	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.	0.481
RPA0754	RPA3216	Putative signal transduction histidine kinase with PAS/PAC domains.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.929
RPA0914	RPA0370	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains.	0.472
RPA0914	RPA0981	Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Sensor histidine kinase with multiple PAS and a response regulator receiver domain.	0.588