Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RPA2111 | ntrX | RPA2111 | RPA2595 | PAS domain:sigma-54-dependent transcriptional regulator, Fis family. | Nitrogen assimilation regulatory protein ntrX-Response regulator; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.413 |
| anfA | nifA | RPA1439 | RPA4632 | Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA. | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.921 |
| anfA | vnfA | RPA1439 | RPA1374 | Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA. | Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA. | 0.903 |
| nifA | anfA | RPA4632 | RPA1439 | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA. | 0.921 |
| nifA | ntrC | RPA4632 | RPA2593 | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Nitrogen assimilation regulatory protein ntrC Response regulator; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.436 |
| nifA | vnfA | RPA4632 | RPA1374 | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA. | 0.922 |
| ntrC | nifA | RPA2593 | RPA4632 | Nitrogen assimilation regulatory protein ntrC Response regulator; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.436 |
| ntrC | ntrX | RPA2593 | RPA2595 | Nitrogen assimilation regulatory protein ntrC Response regulator; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Nitrogen assimilation regulatory protein ntrX-Response regulator; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.591 |
| ntrX | RPA2111 | RPA2595 | RPA2111 | Nitrogen assimilation regulatory protein ntrX-Response regulator; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | PAS domain:sigma-54-dependent transcriptional regulator, Fis family. | 0.413 |
| ntrX | ntrC | RPA2595 | RPA2593 | Nitrogen assimilation regulatory protein ntrX-Response regulator; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Nitrogen assimilation regulatory protein ntrC Response regulator; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.591 |
| vnfA | anfA | RPA1374 | RPA1439 | Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA. | Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA. | 0.903 |
| vnfA | nifA | RPA1374 | RPA4632 | Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA. | Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.922 |