STRINGSTRING
Psyc_0025 Psyc_0025 hemD hemD zipA zipA Psyc_0337 Psyc_0337 Psyc_0437 Psyc_0437 Psyc_0438 Psyc_0438 Psyc_0544 Psyc_0544 Psyc_0698 Psyc_0698 Psyc_0785 Psyc_0785 Psyc_0788 Psyc_0788 Psyc_0930 Psyc_0930 Psyc_1081 Psyc_1081 Psyc_1192 Psyc_1192 Psyc_1405 Psyc_1405 Psyc_1406 Psyc_1406 Psyc_1469 Psyc_1469 Psyc_1506 Psyc_1506 Psyc_1550 Psyc_1550 Psyc_1764 Psyc_1764 Psyc_1945 Psyc_1945
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Psyc_0025Conserved hypothetical protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (361 aa)
hemDPossible uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (327 aa)
zipAPossible cell division protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. (341 aa)
Psyc_0337Hypothetical protein. (195 aa)
Psyc_0437Hypothetical protein. (176 aa)
Psyc_0438Conserved hypothetical protein; Part of a putative prophage. (320 aa)
Psyc_0544Hypothetical protein; 4 transmembrane domains predicted. (207 aa)
Psyc_0698Conserved hypothetical protein; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.791 at residue 23. (299 aa)
Psyc_0785Possible competence protein, ComEC; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.990) with cleavage site probability 0.913 at residue 21. (986 aa)
Psyc_0788Hypothetical protein; 7 transmembrane helices. (265 aa)
Psyc_0930Hypothetical protein; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.991) with cleavage site probability 0.990 at residue 31. (309 aa)
Psyc_1081Conserved hypothetical protein; 65bp signalP site at n-terminus; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.999) with cleavage site probability 0.998 at residue 65. (404 aa)
Psyc_1192Hypothetical protein; RBS found. One predicted transmembrane helix. Contains a predicted signal peptidase target sequence. (392 aa)
Psyc_1405Conserved hypothetical protein; LysM domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.994) with cleavage site probability 0.849 at residue 36. (604 aa)
Psyc_1406Conserved hypothetical protein; Contains TPR repeat know to be involved in protein-protein interaction. (531 aa)
Psyc_1469Conserved Hypothetical protein; Protein interacting Tpr repeat domain; Citation: ieter P., Tugendreich S., Lamb J.R. Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem. Sci. 20: 257- 259 (1995) [PubMed: 7667876 ]; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.989) with cleavage site probability 0.571 at residue 44. (291 aa)
Psyc_1506Hypothetical protein. (245 aa)
Psyc_1550Hypothetical protein; RBS found. Contains a Sel1-like repeat. (431 aa)
Psyc_1764Hypothetical protein. (208 aa)
Psyc_1945Conserved hypothetical protein. (259 aa)
Your Current Organism:
Psychrobacter arcticus
NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4
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