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rpl23p rpl23p rps19p rps19p rpl22p rpl22p rps3p rps3p rpl29p rpl29p rps17p rps17p rpl14p rpl14p rps4e rps4e rpl5p rpl5p rps14p rps14p rps8p rps8p rpl6p rpl6p rpl32e rpl32e rpl19e rpl19e rpl18p rpl18p rps5p rps5p rpl30p rpl30p rpl15p rpl15p rps13p rps13p rps4p rps4p rps11p rps11p rplX rplX rpl31e rpl31e rps19e rps19e rps17e rps17e rpl15e rpl15e rpl37ae rpl37ae rps28e rps28e rpl24e rpl24e rps6e rps6e eif1a eif1a rpl21e rpl21e fusA fusA rps7p rps7p rpl30e rpl30e rpl44e rpl44e rpl10ae rpl10ae rpl40e rpl40e eif5a eif5a rpl11p rpl11p rpl1p rpl1p rpl10e rpl10e rpl12p rpl12p Mbur_2049 Mbur_2049 rpl37e rpl37e rps24e rps24e rps3ae rps3ae rps15p rps15p rpl18e rpl18e rps9p rps9p rps2p rps2p
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl23pLSU ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa)
rps19pSSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (137 aa)
rpl22pLSU ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (151 aa)
rps3pSSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (304 aa)
rpl29pLSU ribosomal protein L29P; Evidence code ER2; Belongs to the universal ribosomal protein uL29 family. (67 aa)
rps17pSSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (109 aa)
rpl14pLSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rps4eSSU ribosomal protein S4E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS4 family. (236 aa)
rpl5pLSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (169 aa)
rps14pSSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles. (50 aa)
rps8pSSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl6pLSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rpl32eLSU ribosomal protein L32E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eL32 family. (148 aa)
rpl19eLSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (148 aa)
rpl18pLSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (173 aa)
rps5pSSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (211 aa)
rpl30pLSU ribosomal protein L30P; Evidence code ER2. (153 aa)
rpl15pLSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (147 aa)
rps13pSSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (148 aa)
rps4pSSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (184 aa)
rps11pSSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (126 aa)
rplXLSU ribosomal protein LX; Evidence code ER2. (58 aa)
rpl31eLSU ribosomal protein L31E; Evidence code ER2; Belongs to the ribosomal protein L31e family. (88 aa)
rps19eSSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (149 aa)
rps17eSSU ribosomal protein S17E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
rpl15eLSU ribosomal protein L15E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eL15 family. (197 aa)
rpl37aeLSU ribosomal protein L37Ae; Binds to the 23S rRNA. (95 aa)
rps28eSSU ribosomal protein S28E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rpl24eLSU ribosomal protein L24E; Binds to the 23S rRNA. (62 aa)
rps6eSSU ribosomal protein S6E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS6 family. (135 aa)
eif1aTranslation initiation factor aIF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (106 aa)
rpl21eLSU ribosomal protein L21E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
fusATranslation elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase [...] (730 aa)
rps7pSSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (186 aa)
rpl30eLSU ribosomal protein L30E; Evidence code ER2. (95 aa)
rpl44eLSU ribosomal protein L44E; Binds to the 23S rRNA. (92 aa)
rpl10aeLSU ribosomal protein L10AE; Evidence code ER2; Belongs to the universal ribosomal protein uL16 family. (172 aa)
rpl40eLSU ribosomal protein L40E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
eif5aTranslation initiation factor aIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. (127 aa)
rpl11pLSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
rpl1pLSU ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa)
rpl10eLSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (337 aa)
rpl12pLSU ribosomal protein L12P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (100 aa)
Mbur_2049Translation initiation factor SUI1; Evidence code ER2; Belongs to the SUI1 family. (102 aa)
rpl37eLSU ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (56 aa)
rps24eSSU ribosomal protein S24E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS24 family. (102 aa)
rps3aeSSU ribosomal protein S3Ae; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS1 family. (235 aa)
rps15pSSU ribosomal protein S15P; Evidence code ER2. (152 aa)
rpl18eLSU ribosomal protein L18E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eL18 family. (126 aa)
rps9pSSU ribosomal protein S9P; Evidence code ER2; Belongs to the universal ribosomal protein uS9 family. (134 aa)
rps2pSSU ribosomal protein S2P; Evidence code ER2; Belongs to the universal ribosomal protein uS2 family. (214 aa)
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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