(7 nodes) Mixed, incl. Ribonucleoprotein complex binding, and GTP binding domain network (Methanococcoides burtonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl24p	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (117 aa)
	eif6	Translation initiation factor aIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (217 aa)
	Mbur_0370	NMD3 family protein; Evidence code ER4. (353 aa)
	Mbur_0396	GTP-binding protein; Evidence code ER3. (254 aa)
	Mbur_1887	GTP-binding domain protein; Evidence code ER4. (356 aa)
	rps8e	SSU ribosomal protein S8E; Evidence code ER2. (125 aa)
	rpl13p	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (139 aa)

Your Current Organism:

Methanococcoides burtonii

NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mbur_0370	Mbur_0396	Mbur_0370	Mbur_0396	NMD3 family protein; Evidence code ER4.	GTP-binding protein; Evidence code ER3.	0.874
Mbur_0370	Mbur_1887	Mbur_0370	Mbur_1887	NMD3 family protein; Evidence code ER4.	GTP-binding domain protein; Evidence code ER4.	0.964
Mbur_0370	eif6	Mbur_0370	Mbur_0113	NMD3 family protein; Evidence code ER4.	Translation initiation factor aIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.	0.939
Mbur_0370	rpl13p	Mbur_0370	Mbur_2389	NMD3 family protein; Evidence code ER4.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.767
Mbur_0370	rpl24p	Mbur_0370	Mbur_0012	NMD3 family protein; Evidence code ER4.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.785
Mbur_0370	rps8e	Mbur_0370	Mbur_2101	NMD3 family protein; Evidence code ER4.	SSU ribosomal protein S8E; Evidence code ER2.	0.941
Mbur_0396	Mbur_0370	Mbur_0396	Mbur_0370	GTP-binding protein; Evidence code ER3.	NMD3 family protein; Evidence code ER4.	0.874
Mbur_0396	Mbur_1887	Mbur_0396	Mbur_1887	GTP-binding protein; Evidence code ER3.	GTP-binding domain protein; Evidence code ER4.	0.972
Mbur_0396	eif6	Mbur_0396	Mbur_0113	GTP-binding protein; Evidence code ER3.	Translation initiation factor aIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.	0.881
Mbur_0396	rpl13p	Mbur_0396	Mbur_2389	GTP-binding protein; Evidence code ER3.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
Mbur_0396	rpl24p	Mbur_0396	Mbur_0012	GTP-binding protein; Evidence code ER3.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
Mbur_0396	rps8e	Mbur_0396	Mbur_2101	GTP-binding protein; Evidence code ER3.	SSU ribosomal protein S8E; Evidence code ER2.	0.906
Mbur_1887	Mbur_0370	Mbur_1887	Mbur_0370	GTP-binding domain protein; Evidence code ER4.	NMD3 family protein; Evidence code ER4.	0.964
Mbur_1887	Mbur_0396	Mbur_1887	Mbur_0396	GTP-binding domain protein; Evidence code ER4.	GTP-binding protein; Evidence code ER3.	0.972
Mbur_1887	eif6	Mbur_1887	Mbur_0113	GTP-binding domain protein; Evidence code ER4.	Translation initiation factor aIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.	0.999
Mbur_1887	rpl13p	Mbur_1887	Mbur_2389	GTP-binding domain protein; Evidence code ER4.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.799
Mbur_1887	rpl24p	Mbur_1887	Mbur_0012	GTP-binding domain protein; Evidence code ER4.	LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.861
Mbur_1887	rps8e	Mbur_1887	Mbur_2101	GTP-binding domain protein; Evidence code ER4.	SSU ribosomal protein S8E; Evidence code ER2.	0.999
eif6	Mbur_0370	Mbur_0113	Mbur_0370	Translation initiation factor aIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.	NMD3 family protein; Evidence code ER4.	0.939
eif6	Mbur_0396	Mbur_0113	Mbur_0396	Translation initiation factor aIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.	GTP-binding protein; Evidence code ER3.	0.881