(6 nodes) Peptidase M16, N-terminal, and Ubiquinol-cytochrome-c reductase activity network (Nitrosomonas sp. Is79A3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AEJ00029.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (83 aa)
	AEJ00032.1	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein. (434 aa)
	AEJ00238.1	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family. (467 aa)
	AEJ02853.1	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1. (240 aa)
	AEJ02854.1	Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (411 aa)
	AEJ02855.1	Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (202 aa)

Your Current Organism:

Nitrosomonas sp. Is79A3

NCBI taxonomy Id: 261292
Other names: N. sp. Is79A3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEJ00029.1	AEJ00032.1	Nit79A3_0122	Nit79A3_0125	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	0.980
AEJ00029.1	AEJ00238.1	Nit79A3_0122	Nit79A3_0350	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	0.901
AEJ00029.1	AEJ02853.1	Nit79A3_0122	Nit79A3_3115	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	0.967
AEJ00029.1	AEJ02854.1	Nit79A3_0122	Nit79A3_3116	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.934
AEJ00029.1	AEJ02855.1	Nit79A3_0122	Nit79A3_3117	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.965
AEJ00032.1	AEJ00029.1	Nit79A3_0125	Nit79A3_0122	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.980
AEJ00032.1	AEJ00238.1	Nit79A3_0125	Nit79A3_0350	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	0.966
AEJ00032.1	AEJ02853.1	Nit79A3_0125	Nit79A3_3115	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	0.990
AEJ00032.1	AEJ02854.1	Nit79A3_0125	Nit79A3_3116	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.961
AEJ00032.1	AEJ02855.1	Nit79A3_0125	Nit79A3_3117	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.988
AEJ00238.1	AEJ00029.1	Nit79A3_0350	Nit79A3_0122	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.901
AEJ00238.1	AEJ00032.1	Nit79A3_0350	Nit79A3_0125	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	0.966
AEJ00238.1	AEJ02853.1	Nit79A3_0350	Nit79A3_3115	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	0.990
AEJ00238.1	AEJ02854.1	Nit79A3_0350	Nit79A3_3116	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.961
AEJ00238.1	AEJ02855.1	Nit79A3_0350	Nit79A3_3117	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.988
AEJ02853.1	AEJ00029.1	Nit79A3_3115	Nit79A3_0122	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: nit:NAL212_0453 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.967
AEJ02853.1	AEJ00032.1	Nit79A3_3115	Nit79A3_0125	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_0450 peptidase M16 domain-containing protein.	0.990
AEJ02853.1	AEJ00238.1	Nit79A3_3115	Nit79A3_0350	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: nit:NAL212_3016 processing peptidase; Belongs to the peptidase M16 family.	0.990
AEJ02853.1	AEJ02854.1	Nit79A3_3115	Nit79A3_3116	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	Cytochrome b/b6 domain-containing protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AEJ02853.1	AEJ02855.1	Nit79A3_3115	Nit79A3_3117	PFAM: Cytochrome c1; KEGG: nit:NAL212_2479 cytochrome c1.	Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999