STRINGSTRING
gerYA gerYA gerPF1 gerPF1 gerPA gerPA GBAA_2012 GBAA_2012 ypeB ypeB sleB sleB gerAA gerAA gerSA gerSA gerSB gerSB gerKA gerKA gerSC gerSC prkC prkC spoVAF spoVAF gerLA gerLA gerLB gerLB gerLC gerLC gerYC gerYC gpR gpR gerHA gerHA gerHC gerHC gerHB gerHB gerKC gerKC gerKB gerKB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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gerYASpore germination protein GerYA; Identified by match to protein family HMM PF03323. (501 aa)
gerPF1Spore germination protein GerPF; Required for the formation of functionally normal spores. Could be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor. (71 aa)
gerPASpore germination protein GerPA; Required for the formation of functionally normal spores. Could be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor (By similarity). (73 aa)
GBAA_2012Putative membrane protein. (346 aa)
ypeBGermination protein YpeB; Identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889. (446 aa)
sleBSpore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. (253 aa)
gerAASpore germination protein GerAA; Identified by match to protein family HMM PF03323. (437 aa)
gerSASpore germination protein; Identified by match to protein family HMM PF03323. (512 aa)
gerSBSpore germination protein; Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912. (365 aa)
gerKASpore germination protein GerKA; Identified by match to protein family HMM PF03323. (500 aa)
gerSCSpore germination protein; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887. (378 aa)
prkCSerine/threonine protein kinase; Protein kinase that is responsible for triggering spore germination in response to muropeptides, signaling bacteria to exit dormancy. PrkC is thus a germination receptor that binds peptidoglycan fragments containing m-Dpm (meso-diaminopimelate), which act as spore germinants. Probably autophosphorylates and phosphorylates FusA (EF-G, elongation factor G); the latter modification is likely necessary for germination in response to peptidoglycan. (657 aa)
spoVAFStage V sporulation protein AF; Identified by match to protein family HMM PF03323. (490 aa)
gerLASpore germination protein GerLA; Identified by match to protein family HMM PF03323. (478 aa)
gerLBSpore germination protein GerLB; Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912. (343 aa)
gerLCSpore germination protein GerLC; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887. (388 aa)
gerYCSpore germination protein GerYC; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887. (331 aa)
gpRSpore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. (368 aa)
gerHASpore germination protein GerHA; Identified by match to protein family HMM PF03323. (747 aa)
gerHCSpore germination protein GerHC; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887. (359 aa)
gerHBSpore germination protein GerHB; Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912. (364 aa)
gerKCSpore germination protein GerKC; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887. (374 aa)
gerKBSpore germination protein GerKB; Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912. (368 aa)
Your Current Organism:
Bacillus anthracis
NCBI taxonomy Id: 261594
Other names: B. anthracis str. 'Ames Ancestor', Bacillus anthracis str. 'Ames Ancestor', Bacillus anthracis str. Ames 0581, Bacillus anthracis str. Ames Ancestor
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