14 items (Bacillus anthracis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sigK	RNA polymerase sigma-27 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor directs the transcription of crystal protein genes, a sporulation-regulated event (By similarity). (237 aa)
	spoIIIAG	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830. (220 aa)
	spoIIM	Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane. (215 aa)
	spoIVA	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Directs the assembly of the coat and exosporium to an area around the forespore. (492 aa)
	bofA	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862. (89 aa)
	spoIIP	Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867. (384 aa)
	cotM	Spore coat protein M. (128 aa)
	cotE	Spore coat protein E. (180 aa)
	spoVIF	Conserved hypothetical protein. (83 aa)
	spoIID	Stage II sporulation protein D; Identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870. (339 aa)
	spoIIID	Stage III sporulation protein D; Identified by match to protein family HMM TIGR02844. (132 aa)
	spoVID	Putative stage VI sporulation protein D; Identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907. (327 aa)
	spoIVFA	Stage IV sporulation protein FA; Identified by match to protein family HMM PF01551. (248 aa)
	spoIVFB	Stage IV sporulation protein FB; Identified by match to protein family HMM PF02163. (286 aa)

Your Current Organism:

Bacillus anthracis

NCBI taxonomy Id: 261594
Other names: B. anthracis str. 'Ames Ancestor', Bacillus anthracis str. 'Ames Ancestor', Bacillus anthracis str. Ames 0581, Bacillus anthracis str. Ames Ancestor

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bofA	spoIID	GBAA_0024	GBAA_5528	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage II sporulation protein D; Identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870.	0.451
bofA	spoIIIAG	GBAA_0024	GBAA_4411	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	0.545
bofA	spoIIID	GBAA_0024	GBAA_5521	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage III sporulation protein D; Identified by match to protein family HMM TIGR02844.	0.667
bofA	spoIIM	GBAA_0024	GBAA_4314	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.	0.585
bofA	spoIIP	GBAA_0024	GBAA_2068	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867.	0.709
bofA	spoIVFA	GBAA_0024	GBAA_4679	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage IV sporulation protein FA; Identified by match to protein family HMM PF01551.	0.834
bofA	spoIVFB	GBAA_0024	GBAA_4678	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Stage IV sporulation protein FB; Identified by match to protein family HMM PF02163.	0.842
bofA	spoVID	GBAA_0024	GBAA_4692	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Putative stage VI sporulation protein D; Identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907.	0.709
bofA	spoVIF	GBAA_0024	GBAA_1527	Sigma-k factor processing regulatory protein BofA; Identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862.	Conserved hypothetical protein.	0.563
cotE	cotM	GBAA_3906	GBAA_3681	Spore coat protein E.	Spore coat protein M.	0.621
cotE	sigK	GBAA_3906	GBAA_4566	Spore coat protein E.	RNA polymerase sigma-27 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor directs the transcription of crystal protein genes, a sporulation-regulated event (By similarity).	0.555
cotE	spoIID	GBAA_3906	GBAA_5528	Spore coat protein E.	Stage II sporulation protein D; Identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870.	0.448
cotE	spoIIIAG	GBAA_3906	GBAA_4411	Spore coat protein E.	Stage III sporulation protein AG; Identified by match to protein family HMM TIGR02830.	0.432
cotE	spoIIID	GBAA_3906	GBAA_5521	Spore coat protein E.	Stage III sporulation protein D; Identified by match to protein family HMM TIGR02844.	0.866
cotE	spoIIM	GBAA_3906	GBAA_4314	Spore coat protein E.	Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.	0.449
cotE	spoIIP	GBAA_3906	GBAA_2068	Spore coat protein E.	Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867.	0.778
cotE	spoIVA	GBAA_3906	GBAA_1530	Spore coat protein E.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Directs the assembly of the coat and exosporium to an area around the forespore.	0.905
cotE	spoIVFA	GBAA_3906	GBAA_4679	Spore coat protein E.	Stage IV sporulation protein FA; Identified by match to protein family HMM PF01551.	0.437
cotE	spoIVFB	GBAA_3906	GBAA_4678	Spore coat protein E.	Stage IV sporulation protein FB; Identified by match to protein family HMM PF02163.	0.432
cotE	spoVID	GBAA_3906	GBAA_4692	Spore coat protein E.	Putative stage VI sporulation protein D; Identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907.	0.957

page 1 of 7

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About