Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cotE | cotH | GBAA_3906 | GBAA_2046 | Spore coat protein E. | Identified by match to protein family HMM PF08757. | 0.780 |
| cotE | gerQ | GBAA_3906 | GBAA_5641 | Spore coat protein E. | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | 0.958 |
| cotE | safA | GBAA_3906 | GBAA_4659 | Spore coat protein E. | Spore coat assembly protein SafA; Identified by match to protein family HMM PF01476. | 0.876 |
| cotE | spoIIID | GBAA_3906 | GBAA_5521 | Spore coat protein E. | Stage III sporulation protein D; Identified by match to protein family HMM TIGR02844. | 0.866 |
| cotE | spoIVA | GBAA_3906 | GBAA_1530 | Spore coat protein E. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Directs the assembly of the coat and exosporium to an area around the forespore. | 0.905 |
| cotE | spoVID | GBAA_3906 | GBAA_4692 | Spore coat protein E. | Putative stage VI sporulation protein D; Identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907. | 0.957 |
| cotE | tgl | GBAA_3906 | GBAA_4173 | Spore coat protein E. | Protein-glutamine gamma-glutamyltransferase; Probably plays a role in the assembly of the spore coat proteins by catalyzing epsilon-(gamma-glutamyl)lysine cross-links. Belongs to the bacillus TGase family. | 0.808 |
| cotH | cotE | GBAA_2046 | GBAA_3906 | Identified by match to protein family HMM PF08757. | Spore coat protein E. | 0.780 |
| cotH | gerQ | GBAA_2046 | GBAA_5641 | Identified by match to protein family HMM PF08757. | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | 0.608 |
| cotH | safA | GBAA_2046 | GBAA_4659 | Identified by match to protein family HMM PF08757. | Spore coat assembly protein SafA; Identified by match to protein family HMM PF01476. | 0.678 |
| cotH | spoIIID | GBAA_2046 | GBAA_5521 | Identified by match to protein family HMM PF08757. | Stage III sporulation protein D; Identified by match to protein family HMM TIGR02844. | 0.403 |
| cotH | spoIVA | GBAA_2046 | GBAA_1530 | Identified by match to protein family HMM PF08757. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Directs the assembly of the coat and exosporium to an area around the forespore. | 0.687 |
| cotH | spoVID | GBAA_2046 | GBAA_4692 | Identified by match to protein family HMM PF08757. | Putative stage VI sporulation protein D; Identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907. | 0.691 |
| dal1 | dal2 | GBAA_0252 | GBAA_2079 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.910 |
| dal2 | dal1 | GBAA_2079 | GBAA_0252 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.910 |
| gerQ | cotE | GBAA_5641 | GBAA_3906 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Spore coat protein E. | 0.958 |
| gerQ | cotH | GBAA_5641 | GBAA_2046 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Identified by match to protein family HMM PF08757. | 0.608 |
| gerQ | safA | GBAA_5641 | GBAA_4659 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Spore coat assembly protein SafA; Identified by match to protein family HMM PF01476. | 0.831 |
| gerQ | spoIIID | GBAA_5641 | GBAA_5521 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Stage III sporulation protein D; Identified by match to protein family HMM TIGR02844. | 0.605 |
| gerQ | spoIVA | GBAA_5641 | GBAA_1530 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Directs the assembly of the coat and exosporium to an area around the forespore. | 0.669 |
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