Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GBAA_1707 | cspC | GBAA_1707 | GBAA_5424 | Transglycosylase, SLT family; Identified by match to protein family HMM PF01464. | Cold shock protein CspC; Identified by match to protein family HMM PF00313. | 0.412 |
| GBAA_1707 | sleB | GBAA_1707 | GBAA_2748 | Transglycosylase, SLT family; Identified by match to protein family HMM PF01464. | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | 0.720 |
| cspC | GBAA_1707 | GBAA_5424 | GBAA_1707 | Cold shock protein CspC; Identified by match to protein family HMM PF00313. | Transglycosylase, SLT family; Identified by match to protein family HMM PF01464. | 0.412 |
| cspC | prkC | GBAA_5424 | GBAA_4000 | Cold shock protein CspC; Identified by match to protein family HMM PF00313. | Serine/threonine protein kinase; Protein kinase that is responsible for triggering spore germination in response to muropeptides, signaling bacteria to exit dormancy. PrkC is thus a germination receptor that binds peptidoglycan fragments containing m-Dpm (meso-diaminopimelate), which act as spore germinants. Probably autophosphorylates and phosphorylates FusA (EF-G, elongation factor G); the latter modification is likely necessary for germination in response to peptidoglycan. | 0.427 |
| cspC | sleB | GBAA_5424 | GBAA_2748 | Cold shock protein CspC; Identified by match to protein family HMM PF00313. | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | 0.428 |
| gerQ | sleB | GBAA_5641 | GBAA_2748 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | 0.679 |
| gerQ | ypeB | GBAA_5641 | GBAA_2747 | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | Germination protein YpeB; Identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889. | 0.671 |
| prkC | cspC | GBAA_4000 | GBAA_5424 | Serine/threonine protein kinase; Protein kinase that is responsible for triggering spore germination in response to muropeptides, signaling bacteria to exit dormancy. PrkC is thus a germination receptor that binds peptidoglycan fragments containing m-Dpm (meso-diaminopimelate), which act as spore germinants. Probably autophosphorylates and phosphorylates FusA (EF-G, elongation factor G); the latter modification is likely necessary for germination in response to peptidoglycan. | Cold shock protein CspC; Identified by match to protein family HMM PF00313. | 0.427 |
| sleB | GBAA_1707 | GBAA_2748 | GBAA_1707 | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | Transglycosylase, SLT family; Identified by match to protein family HMM PF01464. | 0.720 |
| sleB | cspC | GBAA_2748 | GBAA_5424 | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | Cold shock protein CspC; Identified by match to protein family HMM PF00313. | 0.428 |
| sleB | gerQ | GBAA_2748 | GBAA_5641 | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | 0.679 |
| sleB | ypeB | GBAA_2748 | GBAA_2747 | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | Germination protein YpeB; Identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889. | 0.989 |
| ypeB | gerQ | GBAA_2747 | GBAA_5641 | Germination protein YpeB; Identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889. | Spore coat protein GerQ; Identified by match to protein family HMM TIGR02728. | 0.671 |
| ypeB | sleB | GBAA_2747 | GBAA_2748 | Germination protein YpeB; Identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889. | Spore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. | 0.989 |