STRINGSTRING
rncS rncS GBAA_1733 GBAA_1733 GBAA_1916 GBAA_1916 GBAA_1937 GBAA_1937 GBAA_2435 GBAA_2435 GBAA_2439 GBAA_2439 cwlJ1 cwlJ1 GBAA_3170 GBAA_3170 cas2 cas2 GBAA_3543 GBAA_3543 GBAA_3557 GBAA_3557 GBAA_3729 GBAA_3729 GBAA_4195 GBAA_4195 spo0A spo0A spoIIIAA spoIIIAA feoB feoB GBAA_5406 GBAA_5406 GBAA_5454 GBAA_5454 spoIIID spoIIID prfA prfA cwlJ2 cwlJ2 cotJB cotJB spmA spmA hfq1 hfq1 fliG fliG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rncSRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (245 aa)
GBAA_1733Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (297 aa)
GBAA_1916Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (289 aa)
GBAA_1937Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family. (262 aa)
GBAA_2435Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (290 aa)
GBAA_2439Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (300 aa)
cwlJ1Cell wall hydrolase; Identified by match to protein family HMM PF07486. (142 aa)
GBAA_3170Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (292 aa)
cas2Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (193 aa)
GBAA_3543Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (297 aa)
GBAA_3557Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (283 aa)
GBAA_3729Putative als operon regulatory protein AlsR; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (301 aa)
GBAA_4195Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466. (294 aa)
spo0AStage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with Spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. Repressor of abrB, activator of the spoIIa operon. Binds the DNA sequence 5'-TGNCGAA-3' (0A box) (By similarity). (264 aa)
spoIIIAAStage III sporulation protein AA; Identified by match to protein family HMM TIGR02858. (308 aa)
feoBFerrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (662 aa)
GBAA_5406Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (297 aa)
GBAA_5454Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (294 aa)
spoIIIDStage III sporulation protein D; Identified by match to protein family HMM TIGR02844. (132 aa)
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (355 aa)
cwlJ2Cell wall hydrolase; Identified by match to protein family HMM PF07486. (140 aa)
cotJBcotJB protein. (91 aa)
spmAIdentified by match to protein family HMM PF07670. (198 aa)
hfq1Host factor-I protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (64 aa)
fliGFlagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207. (334 aa)
Your Current Organism:
Bacillus anthracis
NCBI taxonomy Id: 261594
Other names: B. anthracis str. 'Ames Ancestor', Bacillus anthracis str. 'Ames Ancestor', Bacillus anthracis str. Ames 0581, Bacillus anthracis str. Ames Ancestor
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