STRINGSTRING
spoVAD-2 spoVAD-2 qoxA qoxA gerLA gerLA plC plC sipT sipT sipW sipW ypeB ypeB sleB sleB sipU sipU ptsG ptsG spoVAD spoVAD secDF secDF sdhB sdhB sdhA sdhA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spoVAD-2Stage V sporulation protein AD; Identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845. (338 aa)
qoxACytochrome aa3 quinol oxidase, subunit II; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I (By similarity). (291 aa)
gerLASpore germination protein GerLA; Identified by match to protein family HMM PF03323. (478 aa)
plCPhospholipase C; Identified by similarity to SP:P09598; match to protein family HMM PF00882. (283 aa)
sipTSignal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family. (187 aa)
sipWSignal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228. (189 aa)
ypeBGermination protein YpeB; Identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889. (446 aa)
sleBSpore cortex-lytic enzyme prepeptide; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869. (253 aa)
sipUSignal peptidase I U; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family. (183 aa)
ptsGPTS system, glucose-specific IIABC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002. (687 aa)
spoVADStage V sporulation protein AD family protein; Identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845. (338 aa)
secDFProtein-export membrane protein SecDF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. (754 aa)
sdhBSuccinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00384. (253 aa)
sdhASuccinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01811. (597 aa)
Your Current Organism:
Bacillus anthracis
NCBI taxonomy Id: 261594
Other names: B. anthracis str. 'Ames Ancestor', Bacillus anthracis str. 'Ames Ancestor', Bacillus anthracis str. Ames 0581, Bacillus anthracis str. Ames Ancestor
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