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murD murD murA murA Bd0141 Bd0141 bglX2 bglX2 Bd0152 Bd0152 Bd0154 Bd0154 Bd0155 Bd0155 nifA nifA Bd0157 Bd0157 ygaD ygaD mrcA mrcA Bd0161 Bd0161 mscL mscL ydiY ydiY Bd0164 Bd0164 ftsE ftsE ftsX ftsX nlpD nlpD ctpA ctpA Bd0170 Bd0170 mreB mreB dadA dadA Bd0398 Bd0398 Bd0463 Bd0463 Bd0464 Bd0464 proC proC Bd0466 Bd0466 Bd0467 Bd0467 ddlA ddlA Bd0641 Bd0641 grxC grxC Bd1323 Bd1323 Bd1324 Bd1324 Bd1325 Bd1325 parA parA Bd1327 Bd1327 bolA bolA Bd1946 Bd1946 Bd1948 Bd1948 mccF mccF Bd1951 Bd1951 mpl mpl nlpD4 nlpD4 dacA dacA Bd2105 Bd2105 Bd2106 Bd2106 dsbA dsbA Bd2329 Bd2329 parA-2 parA-2 Bd2455 Bd2455 Bd2456 Bd2456 mreC mreC Bd2459 Bd2459 Bd2460 Bd2460 rodA rodA Bd2462 Bd2462 Bd2463 Bd2463 Bd2711 Bd2711 mtgA mtgA Bd2884 Bd2884 Bd2886 Bd2886 grlA grlA Bd2888 Bd2888 Bd2890 Bd2890 Bd2891 Bd2891 alr alr ftsZ ftsZ ftsA ftsA ftsQ ftsQ murC murC murG murG ftsW ftsW murD-2 murD-2 mraY mraY murF murF murE murE Bd3213 Bd3213 Bd3214 Bd3214 mraW mraW Bd3217 Bd3217 murB murB Bd3243 Bd3243 dacB dacB mrcB mrcB pbpB pbpB Bd3532 Bd3532 Bd3533 Bd3533 Bd3534 Bd3534 Bd3535 Bd3535 Bd3538 Bd3538 Bd3769 Bd3769 Bd3770 Bd3770 Bd3771 Bd3771 Bd3895 Bd3895 Bd3904 Bd3904 parB parB parA-3 parA-3 Bd3907 Bd3907
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
murDUDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (418 aa)
murAUDP-N-acetylglucosamine enolpyruvyl transferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (414 aa)
Bd0141Penicillin-binding protein; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. (277 aa)
bglX2Beta-N-acetylhexosaminidase; InterPro: Glycoside hydrolase family 3 N terminal; hypothetical protein. (370 aa)
Bd0152Putative membrane protein. (397 aa)
Bd0154Conserved hypothetical protein. (346 aa)
Bd0155Hypothetical protein predicted by Glimmer/Critica. (289 aa)
nifANitrogen fixation specific regulatory protein NifA; InterPro: Sigma-54 factor interaction domain, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; hypothetical protein. (535 aa)
Bd0157Putative mechano-sensitive ion channel; hypothetical protein. (396 aa)
ygaDABC transporter, nucleotide binding/ATPase protein; InterPro: ABC transporter transmembrane region, ABC transporter (ATP-binding protein) homolog ygaD, multidrug resistance protein; hypothetical protein. (573 aa)
mrcAPenicillin-binding protein 1A; InterPro: Penicillin binding protein transpeptidase domain, ponA, penicillin-binding protein 1A [EC: 3.4.-.-]; hypothetical protein. (898 aa)
Bd0161Conserved hypothetical protein. (485 aa)
mscLLarge conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. (144 aa)
ydiYYdiY protein; Putative salt-induced outer membrane protein; hypothetical protein. (238 aa)
Bd0164Hypothetical protein predicted by Glimmer/Critica. (86 aa)
ftsECell-division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division. (220 aa)
ftsXCell division protein ftsX; hypothetical protein. (250 aa)
nlpDInterPro: Peptidase family M23/M37, Membrane proteins related to metalloendopeptidases,; hypothetical protein. (371 aa)
ctpAInterPro: Carboxyl-terminal protease, Adventurous gliding motility protein W; hypothetical protein; Belongs to the peptidase S41A family. (458 aa)
Bd0170Hypothetical protein predicted by Glimmer/Critica. (186 aa)
mreBInterPro: Cell shape determining protein MreB/Mrl; hypothetical protein. (363 aa)
dadAD-amino acid dehydrogenase small subunit; hypothetical protein. (415 aa)
Bd0398Probable cell wall-binding protein, associated metalloendopeptidase; hypothetical protein. (334 aa)
Bd0463Conserved hypothetical protein; Belongs to the UPF0235 family. (94 aa)
Bd0464Similar to cell-division initiation protein (septum placement); hypothetical protein. (178 aa)
proCPyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (275 aa)
Bd0466Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (219 aa)
Bd0467Hypothetical protein predicted by Glimmer/Critica. (208 aa)
ddlAD-alanine-D-alanine ligase; Cell wall formation. (365 aa)
Bd0641Conserved hypothetical protein; Region start changed from 596613 to 596256 (357 bases). (426 aa)
grxCInterPro: Glutaredoxin; hypothetical protein. (98 aa)
Bd1323Pseudouridine synthase Rlu family protein; hypothetical protein. (228 aa)
Bd1324Hypothetical protein predicted by Glimmer/Critica. (136 aa)
Bd1325Hypothetical protein predicted by Glimmer/Critica. (84 aa)
parAChromosome partitioning protein parA; InterPro: ParA family ATPase; High confidence in function and specificity. (309 aa)
Bd1327Hypothetical protein predicted by Glimmer/Critica. (202 aa)
bolAInterPro: BolA-like protein; hypothetical protein; Belongs to the BolA/IbaG family. (110 aa)
Bd1946Hypothetical protein predicted by Glimmer/Critica. (256 aa)
Bd1948Hypothetical protein predicted by Glimmer/Critica. (434 aa)
mccFMicrocin C7 self-immunity protein; Similar to muramoyltetrapeptide carboxypeptidase; hypothetical protein. (309 aa)
Bd1951D-alanyl-D-alanine carboxypeptidease, putative. (353 aa)
mplMpl protein; InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; hypothetical protein. (451 aa)
nlpD4Membrane proteins related to metalloendopeptidases. (193 aa)
dacADacA protein; InterPro: D-alanyl-D-alanine carboxypeptidase 1 (S11) family; hypothetical protein. (286 aa)
Bd2105Hypothetical protein predicted by Glimmer/Critica. (134 aa)
Bd2106Cofac_haem_bdg domain-containing protein; Unnamed protein product; hypothetical protein. (572 aa)
dsbAThiol:disulfide interchange protein dsbA precursor. (402 aa)
Bd2329Hypothetical protein predicted by Glimmer/Critica. (162 aa)
parA-2Partition protein, ParA homolog; InterPro: ParA family ATPase; hypothetical protein. (249 aa)
Bd2455Hypothetical protein predicted by Glimmer/Critica. (214 aa)
Bd2456Unnamed protein product; hypothetical protein. (345 aa)
mreCRod shape-determining protein MreC; InterPro: Type I antifreeze protein; hypothetical protein. (381 aa)
Bd2459Hypothetical protein predicted by Glimmer/Critica. (178 aa)
Bd2460InterPro: Penicillin binding protein transpeptidase domain, COG0768 Cell division protein FtsI/penicillin-binding protein 2; hypothetical protein. (661 aa)
rodARod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (374 aa)
Bd2462Soluble lytic murein transglycosylase and related regulatory proteins(some contain LysM/invasin domains); hypothetical protein. (239 aa)
Bd2463Hypothetical protein predicted by Glimmer/Critica. (186 aa)
Bd2711Soluble lytic murein transglycosylase; InterPro: SLT domain; hypothetical protein. (790 aa)
mtgAMonofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (250 aa)
Bd2884Putative sulfatase, phosphoglycerol transferase, membrane protein, putative; hypothetical protein. (650 aa)
Bd2886Hypothetical protein predicted by Glimmer/Critica; Belongs to the BolA/IbaG family. (76 aa)
grlAGlutaredoxin-related protein; hypothetical protein; Belongs to the glutaredoxin family. Monothiol subfamily. (101 aa)
Bd2888Hypothetical protein predicted by Glimmer/Critica. (68 aa)
Bd2890Oxidoreductase, FAD-binding, putativ; hypothetical protein. (461 aa)
Bd2891Hypothetical protein; InterPro: Fibronectin type III domain; hypothetical protein. (932 aa)
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (402 aa)
ftsZCell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (552 aa)
ftsACell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. (418 aa)
ftsQCell division protein. (248 aa)
murCUDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (453 aa)
murGUndecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (357 aa)
ftsWInterPro: Cell cycle proteins; hypothetical protein; Belongs to the SEDS family. (380 aa)
murD-2UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (462 aa)
mraYphospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (358 aa)
murFUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (473 aa)
murEUDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (496 aa)
Bd3213Cell division protein. (660 aa)
Bd3214Putative histidine kinase. (111 aa)
mraWS-adenosyl-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (328 aa)
Bd3217Hypothetical protein predicted by Glimmer/Critica. (342 aa)
murBUDP-N-acetylpyruvoylglucosamine reductase; Cell wall formation. (336 aa)
Bd3243Membrane-bound lytic murein transglycosylase, putative; InterPro: SLT domain; hypothetical protein. (400 aa)
dacBD-Ala-D-Ala carboxypeptidase 3 (S13) family; dacB; D-alanyl-D-alanine carboxypeptidase; hypothetical protein. (436 aa)
mrcBPenicillin-binding protein 1B; InterPro: Penicillin binding protein transpeptidase domain; hypothetical protein. (790 aa)
pbpBInterPro: Penicillin binding protein transpeptidase domain; hypothetical protein. (444 aa)
Bd3532InterPro: Hemerythrin; hypothetical protein. (136 aa)
Bd3533Serine esterase; InterPro: Phospholipase/Carboxylesterase; hypothetical protein. (214 aa)
Bd3534InterPro: Carboxyl-terminal protease; hypothetical protein; Belongs to the peptidase S41A family. (526 aa)
Bd3535Hypothetical protein. (33 aa)
Bd3538RNA methyltransferase, TrmH family, group 1. (261 aa)
Bd3769Hypothetical protein predicted by Glimmer/Critica. (42 aa)
Bd3770Hypothetical protein predicted by Glimmer/Critica. (275 aa)
Bd3771Membrane protein related to metalloendopeptidases; InterPro: Peptidase family M23/M37; hypothetical protein. (368 aa)
Bd3895Beta-hexosamidase A precursor. (558 aa)
Bd3904Conserved hypothetical protein; Integral membrane protein CcmA involved in cell shape determination. (121 aa)
parBChromosome partitioning protein; InterPro: ParB-like partition protein; hypothetical protein; Belongs to the ParB family. (337 aa)
parA-3Partition protein, ParA homolog; InterPro: ParA family ATPase; hypothetical protein. (286 aa)
Bd3907Hypothetical protein predicted by Glimmer/Critica. (179 aa)
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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