STRINGSTRING
Bd0629 Bd0629 Bd0816 Bd0816 Bd1399 Bd1399 Bd2332 Bd2332 Bd2333 Bd2333 Bd2334 Bd2334 Bd3575 Bd3575
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bd0629Trypsin; InterPro: Serine proteases trypsin family; hypothetical protein. (265 aa)
Bd0816D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); hypothetical protein. (436 aa)
Bd1399Hypothetical protein predicted by Glimmer/Critica. (185 aa)
Bd2332InterPro: Serine proteases trypsin family; hypothetical protein. (313 aa)
Bd2333Hypothetical protein predicted by Glimmer/Critica. (130 aa)
Bd2334InterPro: Serine proteases trypsin family; hypothetical protein. (295 aa)
Bd3575Putative soluble lytic murein transglycosylase. (540 aa)
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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