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PRU_0119 PRU_0119 PRU_0157 PRU_0157 PRU_0397 PRU_0397 PRU_1147 PRU_1147 PRU_1149 PRU_1149 PRU_1150 PRU_1150 nifJ nifJ ppdK ppdK PRU_1719 PRU_1719 PRU_2158 PRU_2158 ackA ackA pta pta PRU_2267 PRU_2267 PRU_2268 PRU_2268 pckA pckA PRU_2431 PRU_2431 PRU_2432 PRU_2432 PRU_2433 PRU_2433
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRU_0119Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (549 aa)
PRU_0157CoA-binding domain protein; Identified by match to protein family HMM PF02629. (686 aa)
PRU_0397Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795. (255 aa)
PRU_1147Keto/oxoacid ferredoxin oxidoreductase, gamma subunit; Identified by match to protein family HMM PF01558. (181 aa)
PRU_1149Putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GB:AAC38211.1; match to protein family HMM PF01855; match to protein family HMM PF02780. (361 aa)
PRU_1150Putative ferridoxin oxidoreductase, 4Fe-4S binding subunit; Identified by similarity to GB:AAC38210.1; match to protein family HMM PF00037. (73 aa)
nifJPyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by similarity to GB:CAA70873.1; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176. (1191 aa)
ppdKPyruvate, phosphate dikinase; Identified by similarity to SP:P22983; match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family. (906 aa)
PRU_1719Putative proton-translocating NADH-quinone oxidoreductase, D subunit; Identified by match to protein family HMM PF00329; match to protein family HMM PF00346. (521 aa)
PRU_2158Putative malate dehydrogenase; Identified by similarity to SP:P10584; match to protein family HMM PF00056; match to protein family HMM PF02866; Belongs to the LDH/MDH superfamily. (328 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa)
ptaPhosphate acetyltransferase; Identified by similarity to SP:P39646; match to protein family HMM PF01515; match to protein family HMM TIGR00651. (336 aa)
PRU_2267Putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GB:BAB21494.1; match to protein family HMM PF01855; match to protein family HMM TIGR03710. (610 aa)
PRU_2268Putative keto/oxoacid ferredoxin oxidoreductase, beta subunit; Identified by similarity to GB:BAB21495.1; match to protein family HMM PF02775. (334 aa)
pckAPhosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa)
PRU_2431Succinate dehydrogenase/fumarate reductase, iron-sulfur protein; Identified by similarity to GB:AAO42601.1; match to protein family HMM TIGR00384. (252 aa)
PRU_2432Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Identified by similarity to GB:AAO42600.1; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. (659 aa)
PRU_2433Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; Identified by similarity to GB:AAO42599.1; match to protein family HMM TIGR02046. (229 aa)
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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