STRINGSTRING
Rxyl_0372 Rxyl_0372 Rxyl_1761 Rxyl_1761 Rxyl_1841 Rxyl_1841 Rxyl_1842 Rxyl_1842 Rxyl_2056 Rxyl_2056 Rxyl_2057 Rxyl_2057 Rxyl_2336 Rxyl_2336 Rxyl_2360 Rxyl_2360 Rxyl_2368 Rxyl_2368 Rxyl_2387 Rxyl_2387 Rxyl_2389 Rxyl_2389 Rxyl_2453 Rxyl_2453 Rxyl_2454 Rxyl_2454 Rxyl_2530 Rxyl_2530 Rxyl_2531 Rxyl_2531 Rxyl_2735 Rxyl_2735
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rxyl_0372PFAM: Enoyl-CoA hydratase/isomerase; KEGG: afu:AF0435 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
Rxyl_1761PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sth:STH214 3-hydroxyacyl-CoA dehydrogenase. (377 aa)
Rxyl_1841PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ctc:CTC02427 putative crotonase. (150 aa)
Rxyl_1842Acetyl-CoA C-acetyltransferase; PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: mag:amb2989 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (360 aa)
Rxyl_2056PFAM: Thiolase; KEGG: sth:STH3011 acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
Rxyl_2057PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1210 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family. (790 aa)
Rxyl_2336PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bha:BH1995 3-hydroxybutyryl-CoA dehydrogenase. (287 aa)
Rxyl_2360PFAM: Thiolase; KEGG: tth:TTC0330 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (385 aa)
Rxyl_2368PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
Rxyl_2387PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: afu:AF0991 glutaryl-CoA dehydrogenase (GcdH). (402 aa)
Rxyl_2389PFAM: Thiolase; KEGG: tte:TTE0549 Acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Rxyl_2453PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1459 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family. (702 aa)
Rxyl_2454PFAM: Thiolase; KEGG: sru:SRU_1460 fatty oxidation complex, beta subunit; Belongs to the thiolase-like superfamily. Thiolase family. (436 aa)
Rxyl_2530PFAM: Thiolase; KEGG: gka:GK3397 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
Rxyl_2531PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0572 acetyl-coenzyme A synthetase family protein. (537 aa)
Rxyl_2735PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: reu:Reut_B3542 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal. (381 aa)
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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