STRINGSTRING
Rxyl_0011 Rxyl_0011 Rxyl_0012 Rxyl_0012 Rxyl_0355 Rxyl_0355 Rxyl_0372 Rxyl_0372 Rxyl_0919 Rxyl_0919 Rxyl_0920 Rxyl_0920 Rxyl_0921 Rxyl_0921 Rxyl_1183 Rxyl_1183 Rxyl_1289 Rxyl_1289 Rxyl_1569 Rxyl_1569 Rxyl_1583 Rxyl_1583 Rxyl_1584 Rxyl_1584 Rxyl_1749 Rxyl_1749 Rxyl_1761 Rxyl_1761 Rxyl_1841 Rxyl_1841 Rxyl_1842 Rxyl_1842 Rxyl_2057 Rxyl_2057 Rxyl_2336 Rxyl_2336 Rxyl_2342 Rxyl_2342 Rxyl_2343 Rxyl_2343 Rxyl_2368 Rxyl_2368 Rxyl_2385 Rxyl_2385 Rxyl_2386 Rxyl_2386 Rxyl_2389 Rxyl_2389 Rxyl_2393 Rxyl_2393 Rxyl_2453 Rxyl_2453 Rxyl_2456 Rxyl_2456 Rxyl_2477 Rxyl_2477 Rxyl_2530 Rxyl_2530 Rxyl_2903 Rxyl_2903 Rxyl_2905 Rxyl_2905 Rxyl_3010 Rxyl_3010 Rxyl_3046 Rxyl_3046 Rxyl_3125 Rxyl_3125 Rxyl_3175 Rxyl_3175
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rxyl_0011PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa56020 putative succinate dehydrogenase flavoprotein subunit. (589 aa)
Rxyl_0012TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: mbo:Mb0253c probable succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase). (272 aa)
Rxyl_0355PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative. (471 aa)
Rxyl_0372PFAM: Enoyl-CoA hydratase/isomerase; KEGG: afu:AF0435 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
Rxyl_0919TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: sso:SSO2128 Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like). (403 aa)
Rxyl_0920Pyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase-like; KEGG: sso:SSO2129 Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-like). (404 aa)
Rxyl_0921Pyruvate ferredoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: sso:SSO2130 Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (porB-like). (396 aa)
Rxyl_1183KEGG: sth:STH2344 tartrate dehydrogenase; TIGRFAM: Tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase. (349 aa)
Rxyl_1289PFAM: MaoC-like dehydratase; KEGG: pfl:PFL_2678 MaoC family protein. (149 aa)
Rxyl_1569TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_2245 acetoacetyl-CoA synthase. (664 aa)
Rxyl_1583Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: nfa:nfa35180 putative CoA transferase B subunit. (269 aa)
Rxyl_1584Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: nfa:nfa35190 putative CoA transferase A subunit. (286 aa)
Rxyl_1749PFAM: aldehyde dehydrogenase; KEGG: mac:MA4079 aldehyde dehydrogenase (NAD(P)+). (481 aa)
Rxyl_1761PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sth:STH214 3-hydroxyacyl-CoA dehydrogenase. (377 aa)
Rxyl_1841PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ctc:CTC02427 putative crotonase. (150 aa)
Rxyl_1842Acetyl-CoA C-acetyltransferase; PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: mag:amb2989 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (360 aa)
Rxyl_2057PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1210 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family. (790 aa)
Rxyl_2336PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bha:BH1995 3-hydroxybutyryl-CoA dehydrogenase. (287 aa)
Rxyl_2342TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1485 acetoacetyl-CoA synthetase. (660 aa)
Rxyl_2343TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_0081 3-hydroxybutyrate dehydrogenase. (262 aa)
Rxyl_2368PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
Rxyl_2385TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold PHB de-polymerase-like; KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. (358 aa)
Rxyl_2386TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold Poly-beta-hydroxybutyrate polymerase-like; KEGG: rru:Rru_A2413 poly(R)-hydroxyalkanoic acid synthase, class I. (614 aa)
Rxyl_2389PFAM: Thiolase; KEGG: tte:TTE0549 Acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Rxyl_2393PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: btk:BT9727_1207 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-CoA reductase). (247 aa)
Rxyl_2453PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1459 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family. (702 aa)
Rxyl_2456PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4780 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (541 aa)
Rxyl_2477PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: gka:GK0373 acetolactate synthaselarge subunit. (543 aa)
Rxyl_2530PFAM: Thiolase; KEGG: gka:GK3397 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
Rxyl_2903TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: tfu:Tfu_0690 bacterial 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (438 aa)
Rxyl_2905PFAM: aldehyde dehydrogenase; KEGG: btk:BT9727_0295 succinate-semialdehyde dehydrogenase (NAD(P)+). (494 aa)
Rxyl_3010PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sil:SPO0596 sorbitol dehydrogenase, putative. (341 aa)
Rxyl_3046PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1683 short chain dehydrogenase. (252 aa)
Rxyl_3125TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: det:DET0833 acetolactate synthase, large subunit, biosynthetic type. (564 aa)
Rxyl_3175Succinate-semialdehyde dehydrogenase (NAD(P)+); PFAM: aldehyde dehydrogenase; KEGG: ade:Adeh_3025 aldehyde dehydrogenase. (465 aa)
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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