(39 nodes) Amino acid ABC transporter, permease protein, 3-TM domain, and ABC-type amino acid transporter activity network (Paraburkholderia xenovorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bxe_A1379	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (307 aa)
	Bxe_A1382	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (267 aa)
	Bxe_A1383	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-. (313 aa)
	Bxe_A1478	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (284 aa)
	Bxe_A1479	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-. (265 aa)
	Bxe_A2431	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (256 aa)
	Bxe_A2432	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-. (279 aa)
	Bxe_A2433	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-. (235 aa)
	Bxe_A2434	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family. (274 aa)
	Bxe_B0599	TC 3.A.1.3.-; TC 3.A.1.3.-. (567 aa)
	Bxe_B1061	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (300 aa)
	Bxe_B1062	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-. (219 aa)
	Bxe_B1063	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-. (214 aa)
	Bxe_B1064	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (289 aa)
	Bxe_B1546	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-. (247 aa)
	Bxe_B1547	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-. (246 aa)
	Bxe_B1548	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (272 aa)
	Bxe_B1819	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (275 aa)
	Bxe_B1820	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-. (216 aa)
	Bxe_B1821	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-. (220 aa)
	Bxe_B1822	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (289 aa)
	Bxe_B2049	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-. (222 aa)
	Bxe_B2050	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family. (251 aa)
	Bxe_C0127	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (272 aa)
	Bxe_C0128	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-. (252 aa)
	Bxe_C0129	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-. (231 aa)
	Bxe_C0396	TC 3.A.1.3.-; TC 3.A.1.3.-. (602 aa)
	Bxe_C0684	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-. (221 aa)
	Bxe_C0685	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (248 aa)
	Bxe_C0776	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (270 aa)
	Bxe_C0777	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-. (218 aa)
	Bxe_C0778	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (278 aa)
	Bxe_C1315	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (250 aa)
	Bxe_C1316	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family. (296 aa)
	Bxe_C1317	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-. (299 aa)
	Bxe_C1325	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-. (265 aa)
	Bxe_C1326	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-. (224 aa)
	Bxe_C1327	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-. (227 aa)
	Bxe_C1330	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-. (282 aa)

Your Current Organism:

Paraburkholderia xenovorans

NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Bxe_A1379	Bxe_A1382	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.	0.795
Bxe_A1379	Bxe_A1383	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.	0.894
Bxe_A1379	Bxe_A1478	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	0.768
Bxe_A1379	Bxe_A1479	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.	0.818
Bxe_A1379	Bxe_A2431	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.	0.631
Bxe_A1379	Bxe_A2432	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.	0.612
Bxe_A1379	Bxe_A2433	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.	0.708
Bxe_A1379	Bxe_A2434	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.	0.429
Bxe_A1379	Bxe_B0599	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	TC 3.A.1.3.-; TC 3.A.1.3.-.	0.870
Bxe_A1379	Bxe_B1061	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.	0.567
Bxe_A1379	Bxe_B1062	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.	0.653
Bxe_A1379	Bxe_B1063	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.	0.646
Bxe_A1379	Bxe_B1546	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.	0.661
Bxe_A1379	Bxe_B1547	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.	0.688
Bxe_A1379	Bxe_B1548	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	0.525
Bxe_A1379	Bxe_B1820	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.	0.733
Bxe_A1379	Bxe_B1821	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.	0.687
Bxe_A1379	Bxe_B1822	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter ATP-binding protein, PAAT family; TC 3.A.1.3.-.	0.728
Bxe_A1379	Bxe_B2049	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.	0.772
Bxe_A1379	Bxe_B2050	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-.	Amino acid ABC transporter substrate-binding protein, PAAT family; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.	0.474

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