(10 nodes) DNA-directed DNA polymerase activity network (Paraburkholderia xenovorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	Bxe_A0578	DNA polymerase III, delta subunit. (372 aa)
	Bxe_A0914	DNA polymerase III, epsilon subunit. (395 aa)
	dnaQ	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (244 aa)
	rnhA	RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (148 aa)
	Bxe_A2262	DNA polymerase III, delta prime subunit. (344 aa)
	Bxe_A2361	DNA-directed DNA polymerase. (957 aa)
	Bxe_A3008	Hypothetical protein. (105 aa)
	dnaE2	DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1195 aa)
	Bxe_A3292	DNA polymerase III, alpha subunit. (1193 aa)
	Bxe_A3637	Putative DNA polymerase III chi subunit. (138 aa)

Your Current Organism:

Paraburkholderia xenovorans

NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bxe_A0578	Bxe_A0914	Bxe_A0578	Bxe_A0914	DNA polymerase III, delta subunit.	DNA polymerase III, epsilon subunit.	0.987
Bxe_A0578	Bxe_A2262	Bxe_A0578	Bxe_A2262	DNA polymerase III, delta subunit.	DNA polymerase III, delta prime subunit.	0.999
Bxe_A0578	Bxe_A2361	Bxe_A0578	Bxe_A2361	DNA polymerase III, delta subunit.	DNA-directed DNA polymerase.	0.999
Bxe_A0578	Bxe_A3292	Bxe_A0578	Bxe_A3292	DNA polymerase III, delta subunit.	DNA polymerase III, alpha subunit.	0.997
Bxe_A0578	Bxe_A3637	Bxe_A0578	Bxe_A3637	DNA polymerase III, delta subunit.	Putative DNA polymerase III chi subunit.	0.999
Bxe_A0578	dnaE2	Bxe_A0578	Bxe_A3164	DNA polymerase III, delta subunit.	DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.983
Bxe_A0578	dnaQ	Bxe_A0578	Bxe_A1250	DNA polymerase III, delta subunit.	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.996
Bxe_A0578	rnhA	Bxe_A0578	Bxe_A1251	DNA polymerase III, delta subunit.	RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.605
Bxe_A0914	Bxe_A0578	Bxe_A0914	Bxe_A0578	DNA polymerase III, epsilon subunit.	DNA polymerase III, delta subunit.	0.987
Bxe_A0914	Bxe_A2262	Bxe_A0914	Bxe_A2262	DNA polymerase III, epsilon subunit.	DNA polymerase III, delta prime subunit.	0.956
Bxe_A0914	Bxe_A2361	Bxe_A0914	Bxe_A2361	DNA polymerase III, epsilon subunit.	DNA-directed DNA polymerase.	0.996
Bxe_A0914	Bxe_A3008	Bxe_A0914	Bxe_A3008	DNA polymerase III, epsilon subunit.	Hypothetical protein.	0.550
Bxe_A0914	Bxe_A3292	Bxe_A0914	Bxe_A3292	DNA polymerase III, epsilon subunit.	DNA polymerase III, alpha subunit.	0.996
Bxe_A0914	Bxe_A3637	Bxe_A0914	Bxe_A3637	DNA polymerase III, epsilon subunit.	Putative DNA polymerase III chi subunit.	0.950
Bxe_A0914	dnaE2	Bxe_A0914	Bxe_A3164	DNA polymerase III, epsilon subunit.	DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	0.988
Bxe_A0914	dnaQ	Bxe_A0914	Bxe_A1250	DNA polymerase III, epsilon subunit.	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.940
Bxe_A0914	rnhA	Bxe_A0914	Bxe_A1251	DNA polymerase III, epsilon subunit.	RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.688
Bxe_A2262	Bxe_A0578	Bxe_A2262	Bxe_A0578	DNA polymerase III, delta prime subunit.	DNA polymerase III, delta subunit.	0.999
Bxe_A2262	Bxe_A0914	Bxe_A2262	Bxe_A0914	DNA polymerase III, delta prime subunit.	DNA polymerase III, epsilon subunit.	0.956
Bxe_A2262	Bxe_A2361	Bxe_A2262	Bxe_A2361	DNA polymerase III, delta prime subunit.	DNA-directed DNA polymerase.	0.999

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