STRINGSTRING
Bxe_B0074 Bxe_B0074 Bxe_B0205 Bxe_B0205 Bxe_B0219 Bxe_B0219 Bxe_B0243 Bxe_B0243 Bxe_B0348 Bxe_B0348 Bxe_B0569 Bxe_B0569 Bxe_B0661 Bxe_B0661 Bxe_B0792 Bxe_B0792 benA benA Bxe_B1053 Bxe_B1053 Bxe_B1060 Bxe_B1060 Bxe_B1108 Bxe_B1108 Bxe_B1199 Bxe_B1199 Bxe_B1304 Bxe_B1304 Bxe_B1433 Bxe_B1433 erpA2 erpA2 Bxe_B1443 Bxe_B1443 Bxe_B1534 Bxe_B1534 Bxe_B1578 Bxe_B1578 Bxe_B1651 Bxe_B1651 Bxe_B1689 Bxe_B1689 Bxe_B1914 Bxe_B1914 Bxe_B2031 Bxe_B2031 Bxe_B2226 Bxe_B2226 mhpB mhpB Bxe_B2348 Bxe_B2348 Bxe_B2504 Bxe_B2504 Bxe_B2533 Bxe_B2533 fdhE fdhE Bxe_B2553 Bxe_B2553 Bxe_B2554 Bxe_B2554 Bxe_B2752 Bxe_B2752 Bxe_B2775 Bxe_B2775 Bxe_B2776 Bxe_B2776 tsaD tsaD Bxe_B2830 Bxe_B2830 Bxe_C0001 Bxe_C0001 coxL coxL Bxe_C0083 Bxe_C0083 Bxe_C0084 Bxe_C0084 Bxe_C0171 Bxe_C0171 Bxe_C0290 Bxe_C0290 napA napA Bxe_C0407 Bxe_C0407 Bxe_C0536 Bxe_C0536 Bxe_C0586 Bxe_C0586 Bxe_C0599 Bxe_C0599 Bxe_C0623 Bxe_C0623 Bxe_C0631 Bxe_C0631 Bxe_C0638 Bxe_C0638 Bxe_C0640 Bxe_C0640 Bxe_C0941 Bxe_C0941 Bxe_C0944 Bxe_C0944 Bxe_C0945 Bxe_C0945 Bxe_C0994 Bxe_C0994 Bxe_C1007 Bxe_C1007 Bxe_C1025 Bxe_C1025 andAc andAc Bxe_C1132 Bxe_C1132 bphC bphC bphA1 bphA1 Bxe_C1225 Bxe_C1225 Bxe_A0011 Bxe_A0011 Bxe_A0061 Bxe_A0061 Bxe_A0093 Bxe_A0093 Bxe_A0346 Bxe_A0346 Bxe_B1320 Bxe_B1320 cyaY cyaY Bxe_A0432 Bxe_A0432 erpA1 erpA1 Bxe_A0650 Bxe_A0650 Bxe_A0651 Bxe_A0651 Bxe_A0697 Bxe_A0697 Bxe_A0949 Bxe_A0949 Bxe_A0950 Bxe_A0950 lapB lapB Bxe_A1100 Bxe_A1100 Bxe_A1102 Bxe_A1102 ohbB ohbB clcA clcA amnB amnB amnA amnA Bxe_A1459 Bxe_A1459 Bxe_A1483 Bxe_A1483 Bxe_A1486 Bxe_A1486 Bxe_A1511 Bxe_A1511 Bxe_A1517 Bxe_A1517 Bxe_A1554 Bxe_A1554 Bxe_A1559 Bxe_A1559 ispG ispG Bxe_A1842 Bxe_A1842 Bxe_A2073 Bxe_A2073 Bxe_A2105 Bxe_A2105 catA catA coxL2 coxL2 Bxe_A2187 Bxe_A2187 Bxe_A2330 Bxe_A2330 rlmD rlmD hmgA hmgA Bxe_A2836 Bxe_A2836 Bxe_A2860 Bxe_A2860 hutI hutI Bxe_A3137 Bxe_A3137 nuoI nuoI nuoB nuoB Bxe_A3342 Bxe_A3342 Bxe_A3468 Bxe_A3468 Bxe_A3556 Bxe_A3556 Bxe_A3593 Bxe_A3593 Bxe_A3635 Bxe_A3635 Bxe_A3813 Bxe_A3813 Bxe_A3841 Bxe_A3841 Bxe_A3885 Bxe_A3885 Bxe_A3886 Bxe_A3886 hmgA-2 hmgA-2 Bxe_A3984 Bxe_A3984 Bxe_A4074 Bxe_A4074 Bxe_A4079 Bxe_A4079 Bxe_A4096 Bxe_A4096 Bxe_A4130 Bxe_A4130 bioB bioB Bxe_A4310 Bxe_A4310 coxL1 coxL1 Bxe_A4369 Bxe_A4369
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bxe_B0074Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (782 aa)
Bxe_B0205Rubredoxin; RubA. (81 aa)
Bxe_B0219Putative PKHD-type hydroxylase. (227 aa)
Bxe_B0243Putative membrane protein. (221 aa)
Bxe_B0348Procollagen-proline,2-oxoglutarate-4- dioxygenase. (296 aa)
Bxe_B0569Conserved hypothetical protein. (284 aa)
Bxe_B0661Enamidase. (422 aa)
Bxe_B0792Putative 2OG-Fe(II) oxygenase superfamily protein. (227 aa)
benABenzoate 1,2-dioxygenase, alpha subunit; Citation: Annu Rev Microbiol. 1996;50:553-90. (463 aa)
Bxe_B1053Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (802 aa)
Bxe_B1060Conserved hypothetical protein. (276 aa)
Bxe_B1108Anthranilate dioxygenase, large subunit (AndAc); Citation: J. Bacteriol. 185 (19), 5871-5881 (2003). (423 aa)
Bxe_B1199Procollagen-proline,2-oxoglutarate-4- dioxygenase. (292 aa)
Bxe_B1304Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (786 aa)
Bxe_B1433Putative ferredoxin like protein; Could be a 3Fe-4S cluster-containing protein. (99 aa)
erpA2HesB/YadR/YfhF; Required for insertion of 4Fe-4S clusters. (124 aa)
Bxe_B1443FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. (148 aa)
Bxe_B1534Putative Cytochrome C6. (143 aa)
Bxe_B1578Iron-sulfur Rieske protein. (437 aa)
Bxe_B1651Hypothetical protein. (268 aa)
Bxe_B1689Cytochrome c, class I. (430 aa)
Bxe_B1914Conserved hypothetical protein. (193 aa)
Bxe_B20313,4-dihydroxyphenylacetate 2,3-dioxygenase; Homoprotocatechuate pathway; Citation: J. Bacteriol. 174 (9), 2903-2912 (1992).FEBS Lett. 275 (1-2), 53-57 (1990). (287 aa)
Bxe_B2226Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (740 aa)
mhpBPutative 2,3-dihydroxyphenylpropionate 1,2- dioxygenase (MhpB); Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6- ketononatrienedioate, respectively; Belongs to the LigB/MhpB extradiol dioxygenase family. (316 aa)
Bxe_B2348Putative aromatic dioxygenase, large subunit. (424 aa)
Bxe_B2504Putative cytochrome c. (434 aa)
Bxe_B2533Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (778 aa)
fdhEFormate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (331 aa)
Bxe_B2553Formate dehydrogenase (quinone-dependent) catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (821 aa)
Bxe_B2554Formate dehydrogenase (quinone-dependent) catalytic subunit. (214 aa)
Bxe_B2752Terephthalate 1,2-dioxygenase, alpha subunit; Citation: FEMS Microbiol. Lett. 220 (2), 255- 260(2003); Terephthalate degradation. (418 aa)
Bxe_B2775Protocatechuate 3,4-dioxygenase, beta subunit; Protocatechuate pathway; Citation: Biochem. Biophys. Res. Commun. 295 (4), 903-909 (2002). (234 aa)
Bxe_B2776Protocatechuate 3,4-dioxygenase, alpha subunit; Protocatechuate pathway; Citation: Biochem. Biophys. Res. Commun. 295 (4), 903-909 (2002). (195 aa)
tsaDO-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (342 aa)
Bxe_B2830Putative osmotic adaptation-related protein. (368 aa)
Bxe_C0001Putative membrane protein. (297 aa)
coxLCarbon monoxide dehydrogenase form I, large chain; Citation: Appl. Environ. Microbiol. 69 (12),7257- 7265 (2003). (803 aa)
Bxe_C0083Putative alcohol dehydrogenase cytochrome c subunit. (473 aa)
Bxe_C0084Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (764 aa)
Bxe_C0171Putative cytochrome c, class I. (469 aa)
Bxe_C0290Putative cytochrome P450. (405 aa)
napAPeriplasmic nitrate reductase subunit NapA apoprotein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (827 aa)
Bxe_C0407Putative Rieske-type ring dioxygenase. (387 aa)
Bxe_C0536Hydrogenase expression/formation protein, HupF/HypC. (100 aa)
Bxe_C0586Rieske-type ring hydroxylating dioxygenase alpha subunit; Citation: J. Bacteriol. 181:2675-2682(1999). (468 aa)
Bxe_C0599Cytochrome P450; Citation: J. Bacteriol. 186:3631-3639(2004), Can.J. Microbiol. 48:49-59(2002); Belongs to the cytochrome P450 family. (425 aa)
Bxe_C0623Conserved hypothetical protein. (358 aa)
Bxe_C0631Cytochrome P450; Citation: J. Bacteriol. 186:3631-3639(2004), Can.J. Microbiol. 48:49-59(2002); Belongs to the cytochrome P450 family. (427 aa)
Bxe_C0638Ferredoxin; Citation: J. Bacteriol. 181:2675-2682(1999). (76 aa)
Bxe_C0640Aromatic ring-cleavage dioxygenase; Citation: J. Bacteriol. 182:3784-3793(2000). (301 aa)
Bxe_C0941Putative Rieske-type ring dioxygenase alpha subunit. (414 aa)
Bxe_C0944Putative ferredoxin. (81 aa)
Bxe_C0945Putative cytochrome P450. (410 aa)
Bxe_C0994Homogentisate pathway; Citation: J. Bacteriol. 186 (15), 5062-5077 (2004). (454 aa)
Bxe_C1007Putative Rieske-type ring dioxygenase. (387 aa)
Bxe_C1025Homogentisate pathway; J. Bacteriol. 186 (15), 5062-5077 (2004). (429 aa)
andAcAnthranilate dioxygenase, large subunit (AndAc); Citation: J. Bacteriol. 185 (19), 5871-5881(2003). (423 aa)
Bxe_C1132Conserved hypothetical protein. (210 aa)
bphC2,3-Dihydroxybiphenyl-1,2-dioxygenase (BphC); Shows a preference for catechols with groups immediately adjacent to the hydroxyl substituents; Belongs to the extradiol ring-cleavage dioxygenase family. (298 aa)
bphA1Biphenyl 2,3-dioxygenase alpha subunit (BphA1); Biphenyl pathway; Citation: J. Bacteriol. 174 (9), 2903-2912 (1992). (459 aa)
Bxe_C1225Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (745 aa)
Bxe_A0011Phenylalanine degradation; Citation: J. Mol. Biol. 320 (3), 645-661 (2002). (336 aa)
Bxe_A0061Cytochrome c family protein. (298 aa)
Bxe_A0093Putative benzoate 1,2-dioxygenase alpha subunit. (363 aa)
Bxe_A0346Cytochrome c, class I. (217 aa)
Bxe_B1320Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (749 aa)
cyaYConserved hypothetical protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. (105 aa)
Bxe_A0432Putative 4,5-extradiol aromatic ring fission dioxygenase, DodA/LigB-like protein; Citation: Christinet,L., Burdet,F.X., Zaiko,M.,Hinz, U. and Zryd,J.P.Plant Physiol. 134 (1), 265-274(2004). (261 aa)
erpA1HesB/YadR/YfhF family protein; Required for insertion of 4Fe-4S clusters. (121 aa)
Bxe_A0650Putative periplasmic cytochrome c. (432 aa)
Bxe_A0651Putative periplasmic cytochrome c. (243 aa)
Bxe_A0697Putative membrane protein; Similarity to sterol desaturase family. (321 aa)
Bxe_A0949Xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein. (802 aa)
Bxe_A0950Xanthine dehydrogenase, subunit A. (543 aa)
lapBPutative membrane protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. (391 aa)
Bxe_A1100Vanillate O-demethylase reductase subunit, VanB. (325 aa)
Bxe_A1102Ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain. (420 aa)
ohbBRieske-type ring hydroxylating dioxygenase, alpha subunit; Citation: Appl Environ Microbiol. 1999May;65(5):2151-62. (428 aa)
clcA3-chlorocatechol 1,2-dioxygenase. (260 aa)
amnB2-aminophenol 1,6-dioxygenase, beta subunit; Citation: Arch Microbiol. 2000 Oct;174(4):265-72. (304 aa)
amnA2-aminophenol 1,6-dioxygenase, alpha subunit; Citation: Arch Microbiol. 2000 Oct;174(4):265-72. (270 aa)
Bxe_A1459Bacterioferritin. (190 aa)
Bxe_A1483Conserved hypothetical protein. (287 aa)
Bxe_A1486Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (771 aa)
Bxe_A1511Conserved hypothetical protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (90 aa)
Bxe_A1517Putative membrane protein. (332 aa)
Bxe_A1554FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. (137 aa)
Bxe_A1559Conserved hypothetical protein. (65 aa)
ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (434 aa)
Bxe_A1842Putative cytochrome C552. (111 aa)
Bxe_A2073Xanthine dehydrogenase, molybdenum binding subunit apoprotein. (980 aa)
Bxe_A2105Putative (poly)aromatic ring hydroxylating dioxygenase, alpha subunit (Rieske (2Fe-2S) region). (427 aa)
catACatechol 1,2-dioxygenase (CatA); Citation: Annu Rev Microbiol. 50:553-90 (1996).Gene 226 (2), 189-198 (1999). (302 aa)
coxL2Carbon monoxide dehydrogenase, large subunit apoprotein; Similar to the protein described byKing G.M. (AEM, 2003), the latter which is located onmegaplasmid); Citation: Appl. Environ. Microbiol. 69 (12),7257- 7265 (2003). (803 aa)
Bxe_A2187Putative alcohol dehydrogenase cytochrome c subunit precursor, cytochrome c553; Citation: Takeda,Y. and Shimizu,T.J. Ferment.Bioeng. 72, 1-6 (1991)Kondo,K. and Horinouchi, S.Appl.Environ. Microbiol. 63 (3), 1131-1138 (1997). (476 aa)
Bxe_A2330Putative cytochrome P450 hydroxylase(monooxygenase); Citation: Cupp-Vickery,J.R., Garcia,C., Hofacre, A.and McGee-Estrada,K.J. Mol. Biol. 311 (1), 101-110 (2001); Belongs to the cytochrome P450 family. (417 aa)
rlmD23S rRNA m(5)U-1939 methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (434 aa)
hmgAHomogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. (431 aa)
Bxe_A2836Putative transmembrane protein. (213 aa)
Bxe_A2860Predicted metal-dependent enzyme of the double- stranded beta helix superfamily. (191 aa)
hutIImidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (431 aa)
Bxe_A3137Bacterioferritin; Iron-storage protein. (159 aa)
nuoINADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
nuoBNADH dehydrogenase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity). (159 aa)
Bxe_A3342Putative rubredoxin. (63 aa)
Bxe_A3468Putative iron-sulphur rieske protein. (387 aa)
Bxe_A3556P-cumate dioxygenase large subunit (CmtAb); P-cumate pathway; Citation: J. Bacteriol. 178 (5), 1351-1362 (1996). (434 aa)
Bxe_A3593Putative cytochrome P450. (420 aa)
Bxe_A3635Putative cytochrome c, class I. (112 aa)
Bxe_A3813Rubredoxin. (56 aa)
Bxe_A3841Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (760 aa)
Bxe_A3885Xanthine dehydrogenase, molybdenum binding subunit apoprotein / Xanthine oxidase. (788 aa)
Bxe_A3886Putative xanthine dehydrogenase. (507 aa)
hmgA-2Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate. (448 aa)
Bxe_A3984Putative ferritin DPS-family DNA binding protein; Belongs to the Dps family. (165 aa)
Bxe_A4074Putative periplasmic cytochrome c protein. (257 aa)
Bxe_A4079Putative cytochrome c, class I. (269 aa)
Bxe_A4096Putative cytochrome c. (447 aa)
Bxe_A4130Putative membrane protein. (613 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (360 aa)
Bxe_A4310Putative cytochrome c, class I. (118 aa)
coxL1Xanthine dehydrogenase, molybdenum binding subunit apoprotein; Citation: Appl. Environ. Microbiol. 69 (12),7257- 7265 (2003). (793 aa)
Bxe_A4369Conserved hypothetical protein. (253 aa)
Your Current Organism:
Paraburkholderia xenovorans
NCBI taxonomy Id: 266265
Other names: Burkholderia cepacia LB400, Burkholderia fungorum LB400, Burkholderia sp. LB400, Burkholderia xenovorans LB400, P. xenovorans LB400, Paraburkholderia xenovorans LB400, Pseudomonas LB400, Pseudomonas sp. (strain LB400), Pseudomonas sp. LB400
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