STRINGSTRING
HY04_09955 HY04_09955 argD argD HY04_12090 HY04_12090 HY04_12065 HY04_12065 icd icd thrA_2 thrA_2 asd asd HY04_06000 HY04_06000 acn acn gltA gltA aspC_2 aspC_2 HY04_13995 HY04_13995 ilvK ilvK aspC_1 aspC_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HY04_09955Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
argDAminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (391 aa)
HY04_12090Aminodeoxychorismate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
HY04_12065GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
icdIsocitrate dehydrogenase; NADP-specific, catalyzes the formation of 2-oxoglutarate from isocitrate or oxalosuccinate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monomeric-type IDH family. (739 aa)
thrA_2Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family. (412 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (330 aa)
HY04_06000Uroporphyrinogen decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
acnAconitate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
gltAType II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the citrate synthase family. (428 aa)
aspC_2Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
HY04_13995Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
ilvKBranched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (357 aa)
aspC_1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
Your Current Organism:
Chryseobacterium antarcticum
NCBI taxonomy Id: 266748
Other names: C. antarcticum, Chryseobacterium antarcticum (Yi et al. 2005) Kampfer et al. 2009 emend. Hahnke et al. 2016, Chryseobacterium sp. AT1013, DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225, NCTC 13489, Sejongia antarctica, Sejongia antarctica Yi et al. 2005, strain AT1013
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