STRINGSTRING
Meso_0079 Meso_0079 Meso_0753 Meso_0753 Meso_1361 Meso_1361 Meso_1362 Meso_1362 gatC gatC Meso_1364 Meso_1364 gatA gatA Meso_1366 Meso_1366 gatB gatB Meso_2296 Meso_2296 Meso_2379 Meso_2379 Meso_2714 Meso_2714 Meso_2823 Meso_2823 Meso_2824 Meso_2824 Meso_2968 Meso_2968 Meso_2969 Meso_2969 Meso_2970 Meso_2970 Meso_2971 Meso_2971 Meso_3726 Meso_3726
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0079PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3399 carbon-nitrogen hydrolase family protein. (272 aa)
Meso_0753PFAM: protein of unknown function DUF179; KEGG: mlo:mlr7511 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. (202 aa)
Meso_1361Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (160 aa)
Meso_1362PFAM: beta-lactamase-like; KEGG: mlo:mll0680 hypothetical protein; Belongs to the UPF0173 family. (234 aa)
gatCaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (95 aa)
Meso_1364PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll0676 acetyl transferase. (158 aa)
gatAaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (493 aa)
Meso_1366PFAM: protein of unknown function DUF218; KEGG: mlo:mll0674 hypothetical protein. (266 aa)
gatBaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (499 aa)
Meso_2296PFAM: Amidase; KEGG: dar:Daro_1360 amidase; Belongs to the amidase family. (456 aa)
Meso_2379PFAM: Amidase; KEGG: sme:SMa1377 putative amidase; Belongs to the amidase family. (480 aa)
Meso_2714PFAM: Amidase; KEGG: mlo:mlr2975 glutamyl-tRNA(Gln) amidotransferase, subunitA. (395 aa)
Meso_2823PFAM: coenzyme A transferase; KEGG: mlo:mll4183 acetate CoA-transferase, alpha subunit. (285 aa)
Meso_2824PFAM: coenzyme A transferase; KEGG: mlo:mll4181 acetoacetyl-CoA transferase b subunit. (256 aa)
Meso_2968PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sme:SMc00459 putative mandelate racemase / muconate cycloisomerase. (326 aa)
Meso_2969KEGG: gme:Gmet_2205 coenzyme A transferase. (300 aa)
Meso_2970PFAM: coenzyme A transferase; KEGG: nph:NP6032A 3-oxoacid CoA-transferase, beta subunit. (256 aa)
Meso_2971PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ppu:PP0159 CaiB/BaiF family protein; Belongs to the CoA-transferase III family. (419 aa)
Meso_3726PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein. (283 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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