STRINGSTRING
Meso_0605 Meso_0605 Meso_0606 Meso_0606 Meso_0608 Meso_0608 Meso_0609 Meso_0609 Meso_0610 Meso_0610 Meso_2084 Meso_2084 Meso_3996 Meso_3996 Meso_3997 Meso_3997 Meso_3998 Meso_3998 Meso_3999 Meso_3999 Meso_4000 Meso_4000 Meso_4001 Meso_4001 Meso_4002 Meso_4002
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0605PFAM: Flp/Fap pilin component; KEGG: sme:SMa1570 probable PilA2 pilus assembly protein. (57 aa)
Meso_0606KEGG: sme:SMa1580 hypothetical protein. (167 aa)
Meso_0608PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein. (580 aa)
Meso_0609KEGG: sme:SMa1576 probable CpaB2 pilus assembly protein. (267 aa)
Meso_0610PFAM: peptidase A24A, prepilin type IV; KEGG: sme:SMa1578 prepilin peptidase CpaA. (170 aa)
Meso_2084KEGG: mlo:mlr7847 hypothetical protein. (549 aa)
Meso_3996KEGG: mlo:mlr5595 pilus assembly protein cpaB. (270 aa)
Meso_3997PFAM: type II and III secretion system protein transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC; Belongs to the bacterial secretin family. (516 aa)
Meso_3998TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mlo:mlr5598 pilus assembly protein cpaD. (226 aa)
Meso_3999KEGG: sme:SMc04109 putative response regulator protein. (422 aa)
Meso_4000PFAM: type II secretion system protein E; KEGG: mlo:mlr5602 secretory protein kinase, cpaF. (500 aa)
Meso_4001PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein. (337 aa)
Meso_4002PFAM: type II secretion system protein; KEGG: mlo:mlr5604 hypothetical protein. (329 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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