STRINGSTRING
Meso_3996 Meso_3996 Meso_3999 Meso_3999 Meso_4000 Meso_4000 Meso_4001 Meso_4001 Meso_4002 Meso_4002
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_3996KEGG: mlo:mlr5595 pilus assembly protein cpaB. (270 aa)
Meso_3999KEGG: sme:SMc04109 putative response regulator protein. (422 aa)
Meso_4000PFAM: type II secretion system protein E; KEGG: mlo:mlr5602 secretory protein kinase, cpaF. (500 aa)
Meso_4001PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein. (337 aa)
Meso_4002PFAM: type II secretion system protein; KEGG: mlo:mlr5604 hypothetical protein. (329 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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