STRINGSTRING
Meso_0028 Meso_0028 Meso_0029 Meso_0029 Meso_0030 Meso_0030 Meso_0031 Meso_0031 Meso_0032 Meso_0032
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0028PFAM: metallophosphoesterase; KEGG: mlo:mlr5611 hypothetical protein. (233 aa)
Meso_0029DEAD/H associated; PFAM: helicase-like DEAD/DEAH box helicase-like DEAD/H associated; KEGG: mlo:mlr5610 probable ATP dependent DNA helicase. (839 aa)
Meso_0030Methyltransferase type 12; PFAM: Tetratricopeptide TPR_2 Methyltransferase type 11 Methyltransferase type 12; SMART: Tetratricopeptide region; KEGG: mlo:mlr5485 hypothetical protein. (324 aa)
Meso_0031KEGG: mlo:mll5484 putative mRNA 3-end processing factor. (334 aa)
Meso_0032PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: mlo:mll5481 probable DNA ligase. (536 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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