STRINGSTRING
Meso_0080 Meso_0080 Meso_0183 Meso_0183 Meso_0184 Meso_0184 Meso_0404 Meso_0404 Meso_0465 Meso_0465 Meso_0498 Meso_0498 Meso_0573 Meso_0573 Meso_0574 Meso_0574 Meso_0577 Meso_0577 Meso_0578 Meso_0578 Meso_0622 Meso_0622 Meso_0798 Meso_0798 Meso_0837 Meso_0837 Meso_1300 Meso_1300 Meso_1500 Meso_1500 Meso_1501 Meso_1501 Meso_1502 Meso_1502 Meso_1503 Meso_1503 Meso_1599 Meso_1599 Meso_1848 Meso_1848 Meso_2048 Meso_2048 Meso_2313 Meso_2313 Meso_2377 Meso_2377 Meso_2386 Meso_2386 Meso_2411 Meso_2411 Meso_2413 Meso_2413 Meso_2462 Meso_2462 Meso_2482 Meso_2482 Meso_2483 Meso_2483 Meso_2488 Meso_2488 Meso_2529 Meso_2529 Meso_2530 Meso_2530 Meso_2531 Meso_2531 Meso_2538 Meso_2538 Meso_2540 Meso_2540 Meso_2541 Meso_2541 Meso_2542 Meso_2542 Meso_2543 Meso_2543 Meso_2545 Meso_2545 Meso_2549 Meso_2549 Meso_2571 Meso_2571 Meso_2572 Meso_2572 Meso_2621 Meso_2621 Meso_2628 Meso_2628 Meso_2630 Meso_2630 Meso_2631 Meso_2631 Meso_2632 Meso_2632 hutU hutU Meso_2663 Meso_2663 Meso_2748 Meso_2748 Meso_2749 Meso_2749 Meso_2836 Meso_2836 Meso_2943 Meso_2943 Meso_2944 Meso_2944 Meso_2972 Meso_2972 Meso_2973 Meso_2973 Meso_2975 Meso_2975 Meso_2976 Meso_2976 Meso_2977 Meso_2977 Meso_2978 Meso_2978 Meso_2979 Meso_2979 Meso_2980 Meso_2980 Meso_2981 Meso_2981 Meso_2982 Meso_2982 hutU-2 hutU-2 Meso_2984 Meso_2984 hutH hutH hutI hutI Meso_2987 Meso_2987 Meso_2988 Meso_2988 Meso_2989 Meso_2989 Meso_2990 Meso_2990 Meso_2991 Meso_2991 Meso_3053 Meso_3053 Meso_3302 Meso_3302 Meso_3318 Meso_3318 Meso_3432 Meso_3432 Meso_3433 Meso_3433 Meso_3625 Meso_3625 Meso_3689 Meso_3689 Meso_3722 Meso_3722 Meso_3741 Meso_3741 Meso_3767 Meso_3767 Meso_3862 Meso_3862
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0080Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: jan:Jann_2571 transcriptional regulator, LysR family. (303 aa)
Meso_0183Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll6897 transcriptional regulator. (319 aa)
Meso_0184PFAM: protein of unknown function DUF1127. (93 aa)
Meso_0404Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rsp:RSP_3400 transcriptional regulator, LysR family. (311 aa)
Meso_0465Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll6938 transcriptional regulator. (298 aa)
Meso_0498Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family. (332 aa)
Meso_0573PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: bur:Bcep18194_A5985 transcriptional regulator, AraC family. (342 aa)
Meso_0574Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: sme:SMa2163 hypothetical protein. (311 aa)
Meso_0577Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family. (313 aa)
Meso_0578Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr2986 LysR family transcriptional regulatory protein. (298 aa)
Meso_0622PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (340 aa)
Meso_0798Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bbr:BB0351 LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family. (305 aa)
Meso_0837Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atc:AGR_C_4269 probable transcriptional regulator. (308 aa)
Meso_1300Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll1248 probable transcriptional regulator. (299 aa)
Meso_1500PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP1066 hypothetical protein. (614 aa)
Meso_1501PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (347 aa)
Meso_1502PFAM: MCP methyltransferase, CheR-type Methyltransferase type 11 Methyltransferase type 12; KEGG: jan:Jann_3711 methyltransferase type 12. (360 aa)
Meso_1503Hypothetical protein. (153 aa)
Meso_1599PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (361 aa)
Meso_1848Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:bll6415 transcriptional regulatory protein. (314 aa)
Meso_2048PFAM: helix-turn-helix, AraC type; KEGG: ret:RHE_CH03443 transcriptional regulator protein, AraC family. (300 aa)
Meso_2313Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family. (327 aa)
Meso_2377Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mlr1973 glycine cleavage system transcription activator; Belongs to the LysR transcriptional regulatory family. (296 aa)
Meso_2386Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atc:AGR_C_3765 hypothetical protein. (296 aa)
Meso_2411Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_B4992 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (304 aa)
Meso_2413Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein. (305 aa)
Meso_2462Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:bll2775 transcriptional regulatory protein. (294 aa)
Meso_2482Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rsp:RSP_1297 transcriptional regulator, LysR family. (303 aa)
Meso_2483KEGG: sme:SMb21328 putative Sir2-like transcriptional silencer protein. (286 aa)
Meso_2488Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: atc:AGR_L_475 hypothetical protein. (287 aa)
Meso_2529Glycine betaine/L-proline ABC transporter, ATPase subunit; KEGG: atc:AGR_pAT_303 glycine betaine/L-proline transport ATP-binding protein ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein ABC transporter related; SMART: ATPase. (399 aa)
Meso_2530PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline. (314 aa)
Meso_2531PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: atc:AGR_pAT_305 high-affinity transport system for glycine betaine and proline. (342 aa)
Meso_2538Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation Cupin 2, conserved barrel; KEGG: pae:PA1599 probable transcriptional regulator. (258 aa)
Meso_2540PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sth:STH3194 histidine ammonia-lyase. (514 aa)
Meso_2541PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc00670 histidine transport ATP-binding ABC transporter protein. (278 aa)
Meso_2542PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00671 histidine transport system permease ABC transporter protein. (300 aa)
Meso_2543PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc00672 histidine-binding periplasmic signal peptide protein. (342 aa)
Meso_2545TIGRFAM: urocanate hydratase; PFAM: Urocanase; KEGG: sth:STH3193 urocanase. (547 aa)
Meso_2549Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_C5891 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (619 aa)
Meso_2571PFAM: Cupin 2, conserved barrel; KEGG: rpa:RPA1275 hypothetical protein. (166 aa)
Meso_2572Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: reu:Reut_B5021 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation. (319 aa)
Meso_2621PFAM: protein of unknown function DUF427; KEGG: sme:SMb21379 hypothetical protein. (125 aa)
Meso_2628PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_CH00352 histidine ammonia-lyase protein. (516 aa)
Meso_2630Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ret:RHE_CH00487 probable transcriptional regulator protein, LysR family. (386 aa)
Meso_2631PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpa:RPA4693 putative FMN oxidoreductase. (418 aa)
Meso_2632PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sme:SMa0306 putative histidine ammonia-lyase. (535 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (554 aa)
Meso_2663Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rso:RS01682 probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (328 aa)
Meso_2748TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: mlo:mll3039 mono-phosphatase. (259 aa)
Meso_2749PFAM: N-formylglutamate amidohydrolase; KEGG: mlo:mll3040 N-formylglutamate amidohydrolase. (296 aa)
Meso_2836Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll5139 transcriptional regulator. (306 aa)
Meso_2943Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pfo:Pfl_3279 transcriptional regulator, LysR family. (297 aa)
Meso_2944PFAM: ThiJ/PfpI; KEGG: bbr:BB2338 probable transcriptional regulator. (378 aa)
Meso_2972PFAM: conserved hypothetical protein 698; KEGG: atc:AGR_C_1202 hypothetical protein. (339 aa)
Meso_2973Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atu:Atu0672 transcriptional regulator, LysR family. (300 aa)
Meso_2975KEGG: ava:Ava_5014 ABC-type phosphate/phosphonate transport system periplasmic component-like. (270 aa)
Meso_2976Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family. (242 aa)
Meso_2977PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cya:CYA_2230 quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein. (343 aa)
Meso_2978PFAM: phenylalanine/histidine ammonia-lyase; KEGG: mlo:mll7124 histidine ammonia-lyase. (504 aa)
Meso_2979PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_1441 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein. (210 aa)
Meso_2980PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease protein. (211 aa)
Meso_2981PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH2630 glycine betaine/carnitine/choline ABC transporter ATP-binding protein. (317 aa)
Meso_2982PFAM: protein of unknown function DUF886; KEGG: ret:RHE_PE00069 hypothetical protein. (191 aa)
hutU-2Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (562 aa)
Meso_2984PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_PE00071 formiminoglutamase protein. (266 aa)
hutHTIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_PE00072 histidine ammonia-lyase protein; Belongs to the PAL/histidase family. (511 aa)
hutITIGRFAM: imidazolonepropionase; PFAM: amidohydrolase Amidohydrolase 3; KEGG: ret:RHE_PE00073 imidazolonepropionase protein; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (417 aa)
Meso_2987TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: ret:RHE_PE00074 probable cytosine deaminase protein. (450 aa)
Meso_2988Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family. (241 aa)
Meso_2989Hypothetical protein. (101 aa)
Meso_2990Hypothetical protein. (100 aa)
Meso_2991CRISPR-associated protein, Cas2 family; KEGG: nwi:Nwi_1935 protein of unknown function DUF196; Belongs to the CRISPR-associated endoribonuclease Cas2 protein family. (87 aa)
Meso_3053Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:blr6963 transcriptional regulatory protein. (311 aa)
Meso_3302Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ecj:JW0883 predicted DNA-binding transcriptional regulator. (298 aa)
Meso_3318Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mlr3988 transcriptional regulator. (293 aa)
Meso_3432PFAM: Helix-turn-helix, type 11; KEGG: mlo:mlr3764 transcriptional regulator(repressor protein). (234 aa)
Meso_3433PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO1915 glyoxalase family protein. (123 aa)
Meso_3625Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ppu:PP2066 transcriptional regulator, GntR family. (239 aa)
Meso_3689Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein. (303 aa)
Meso_3722Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rso:RS04822 probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (307 aa)
Meso_3741Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rru:Rru_A2257 transcriptional regulator, LysR family. (285 aa)
Meso_3767PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: rpb:RPB_1140 transcriptional regulator, AraC family. (371 aa)
Meso_3862Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family. (341 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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