STRINGSTRING
Meso_0404 Meso_0404 Meso_0837 Meso_0837 Meso_2462 Meso_2462 Meso_2549 Meso_2549 Meso_3302 Meso_3302 Meso_3862 Meso_3862
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0404Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rsp:RSP_3400 transcriptional regulator, LysR family. (311 aa)
Meso_0837Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atc:AGR_C_4269 probable transcriptional regulator. (308 aa)
Meso_2462Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:bll2775 transcriptional regulatory protein. (294 aa)
Meso_2549Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_C5891 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (619 aa)
Meso_3302Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ecj:JW0883 predicted DNA-binding transcriptional regulator. (298 aa)
Meso_3862Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family. (341 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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