STRINGSTRING
Meso_0573 Meso_0573 Meso_0574 Meso_0574 Meso_0577 Meso_0577 Meso_0622 Meso_0622 Meso_1500 Meso_1500 Meso_1501 Meso_1501 Meso_1502 Meso_1502 Meso_1503 Meso_1503 Meso_1599 Meso_1599 Meso_2048 Meso_2048 Meso_2413 Meso_2413 Meso_2488 Meso_2488 Meso_2571 Meso_2571 Meso_2572 Meso_2572 Meso_2944 Meso_2944 Meso_3689 Meso_3689 Meso_3767 Meso_3767
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0573PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: bur:Bcep18194_A5985 transcriptional regulator, AraC family. (342 aa)
Meso_0574Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: sme:SMa2163 hypothetical protein. (311 aa)
Meso_0577Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family. (313 aa)
Meso_0622PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (340 aa)
Meso_1500PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP1066 hypothetical protein. (614 aa)
Meso_1501PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (347 aa)
Meso_1502PFAM: MCP methyltransferase, CheR-type Methyltransferase type 11 Methyltransferase type 12; KEGG: jan:Jann_3711 methyltransferase type 12. (360 aa)
Meso_1503Hypothetical protein. (153 aa)
Meso_1599PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (361 aa)
Meso_2048PFAM: helix-turn-helix, AraC type; KEGG: ret:RHE_CH03443 transcriptional regulator protein, AraC family. (300 aa)
Meso_2413Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein. (305 aa)
Meso_2488Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: atc:AGR_L_475 hypothetical protein. (287 aa)
Meso_2571PFAM: Cupin 2, conserved barrel; KEGG: rpa:RPA1275 hypothetical protein. (166 aa)
Meso_2572Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: reu:Reut_B5021 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation. (319 aa)
Meso_2944PFAM: ThiJ/PfpI; KEGG: bbr:BB2338 probable transcriptional regulator. (378 aa)
Meso_3689Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein. (303 aa)
Meso_3767PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: rpb:RPB_1140 transcriptional regulator, AraC family. (371 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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