STRINGSTRING
Meso_2538 Meso_2538 Meso_2540 Meso_2540 Meso_2545 Meso_2545 Meso_2628 Meso_2628 Meso_2630 Meso_2630 Meso_2631 Meso_2631 Meso_2632 Meso_2632 hutU hutU Meso_2748 Meso_2748 Meso_2749 Meso_2749 Meso_2976 Meso_2976 Meso_2982 Meso_2982 hutU-2 hutU-2 Meso_2984 Meso_2984 hutH hutH hutI hutI Meso_2987 Meso_2987 Meso_2988 Meso_2988 Meso_2989 Meso_2989 Meso_2990 Meso_2990 Meso_2991 Meso_2991 Meso_3625 Meso_3625
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_2538Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation Cupin 2, conserved barrel; KEGG: pae:PA1599 probable transcriptional regulator. (258 aa)
Meso_2540PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sth:STH3194 histidine ammonia-lyase. (514 aa)
Meso_2545TIGRFAM: urocanate hydratase; PFAM: Urocanase; KEGG: sth:STH3193 urocanase. (547 aa)
Meso_2628PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_CH00352 histidine ammonia-lyase protein. (516 aa)
Meso_2630Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ret:RHE_CH00487 probable transcriptional regulator protein, LysR family. (386 aa)
Meso_2631PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpa:RPA4693 putative FMN oxidoreductase. (418 aa)
Meso_2632PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sme:SMa0306 putative histidine ammonia-lyase. (535 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (554 aa)
Meso_2748TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: mlo:mll3039 mono-phosphatase. (259 aa)
Meso_2749PFAM: N-formylglutamate amidohydrolase; KEGG: mlo:mll3040 N-formylglutamate amidohydrolase. (296 aa)
Meso_2976Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family. (242 aa)
Meso_2982PFAM: protein of unknown function DUF886; KEGG: ret:RHE_PE00069 hypothetical protein. (191 aa)
hutU-2Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (562 aa)
Meso_2984PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_PE00071 formiminoglutamase protein. (266 aa)
hutHTIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_PE00072 histidine ammonia-lyase protein; Belongs to the PAL/histidase family. (511 aa)
hutITIGRFAM: imidazolonepropionase; PFAM: amidohydrolase Amidohydrolase 3; KEGG: ret:RHE_PE00073 imidazolonepropionase protein; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (417 aa)
Meso_2987TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: ret:RHE_PE00074 probable cytosine deaminase protein. (450 aa)
Meso_2988Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family. (241 aa)
Meso_2989Hypothetical protein. (101 aa)
Meso_2990Hypothetical protein. (100 aa)
Meso_2991CRISPR-associated protein, Cas2 family; KEGG: nwi:Nwi_1935 protein of unknown function DUF196; Belongs to the CRISPR-associated endoribonuclease Cas2 protein family. (87 aa)
Meso_3625Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ppu:PP2066 transcriptional regulator, GntR family. (239 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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