STRINGSTRING
Meso_3965 Meso_3965 Meso_3966 Meso_3966 Meso_3967 Meso_3967 Meso_3968 Meso_3968 Meso_3969 Meso_3969 Meso_3970 Meso_3970
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_3965PFAM: Malate/L-lactate dehydrogenase; KEGG: ppu:PP2835 oxidoreductase, Ldh family; Belongs to the LDH2/MDH2 oxidoreductase family. (354 aa)
Meso_3966PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll3049 hypothetical protein. (497 aa)
Meso_3967KEGG: bja:bll3050 hypothetical protein. (163 aa)
Meso_3968PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein. (328 aa)
Meso_3969Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfl:PFL_1360 transcriptional regulator, GntR family. (323 aa)
Meso_3970PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD). (509 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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