STRINGSTRING
Meso_0049 Meso_0049 Meso_0050 Meso_0050 Meso_0783 Meso_0783 Meso_0786 Meso_0786 Meso_0787 Meso_0787 Meso_0788 Meso_0788 Meso_0789 Meso_0789 Meso_2489 Meso_2489 Meso_2490 Meso_2490 Meso_2491 Meso_2491 Meso_2517 Meso_2517 Meso_2518 Meso_2518 Meso_2519 Meso_2519 Meso_2520 Meso_2520 Meso_2902 Meso_2902 Meso_2903 Meso_2903 Meso_2904 Meso_2904 Meso_2935 Meso_2935 Meso_2936 Meso_2936 Meso_2937 Meso_2937 Meso_3713 Meso_3713 Meso_3714 Meso_3714 Meso_3715 Meso_3715
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0049TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_3770 TRAP C4-dicarboxylate transport system permease DctM subunit. (591 aa)
Meso_0050PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0661 TRAP dicarboxylate transporter-DctP subunit. (333 aa)
Meso_0783PFAM: Xylose isomerase-like TIM barrel; KEGG: bja:bll6916 hypothetical protein. (268 aa)
Meso_0786KEGG: atc:AGR_L_563 hypothetical protein. (233 aa)
Meso_0787TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC3355 C4-dicarboxylate transport system permease large protein. (425 aa)
Meso_0788PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein. (156 aa)
Meso_0789TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide. (328 aa)
Meso_2489PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: eba:ebA5362 predicted TRAP dicarboxylate transporter, DctP subunit. (348 aa)
Meso_2490KEGG: eba:ebB188 hypothetical protein. (191 aa)
Meso_2491TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eba:ebA5367 conserved hypothetical protein, predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily. (439 aa)
Meso_2517PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB3422 putative inner membrane transport protein. (162 aa)
Meso_2518TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB3255 C4-dicarboxylate transport system permease large protein. (424 aa)
Meso_2519TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB3257 C4-dicarboxylate transport system C4-dicarboxylate-binding protein. (330 aa)
Meso_2520Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMb20375 putative transcriptional regulator protein. (238 aa)
Meso_2902PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_0872 TRAP dicarboxylate transporter-DctM subunit. (420 aa)
Meso_2903KEGG: jan:Jann_2036 hypothetical protein. (182 aa)
Meso_2904PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0870 TRAP dicarboxylate transporter-DctP subunit. (362 aa)
Meso_2935PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_2035 TRAP-type C4-dicarboxylate transport system periplasmic component-like. (360 aa)
Meso_2936KEGG: jan:Jann_2036 hypothetical protein. (182 aa)
Meso_2937PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_2037 TRAP dicarboxylate transporter-DctM subunit. (440 aa)
Meso_3713TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2984 hypothetical protein. (436 aa)
Meso_3714PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO3664 hypothetical protein. (169 aa)
Meso_3715TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB2985 hypothetical protein. (337 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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