STRINGSTRING
Meso_0396 Meso_0396 Meso_0984 Meso_0984 radA radA Meso_0986 Meso_0986 Meso_0988 Meso_0988 Meso_1428 Meso_1428 Meso_2974 Meso_2974
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0396Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (385 aa)
Meso_0984PFAM: Colicin V production protein; KEGG: mlo:mll7834 colicin V production protein. (195 aa)
radADNA replication and repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (462 aa)
Meso_0986Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (389 aa)
Meso_0988PFAM: Cyclopropane-fatty-acyl-phospholipid synthase Methyltransferase type 11 Methyltransferase type 12; KEGG: mlo:mll7842 cyclopropane-fatty-acyl-phospholipid synthase. (417 aa)
Meso_1428TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding alanine dehydrogenase/PNT-like; KEGG: mlo:mll9089 alanine dehydrogenase; Belongs to the AlaDH/PNT family. (371 aa)
Meso_2974PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mlo:mlr1729 ornithine cyclodeaminase. (334 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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