STRINGSTRING
Meso_1610 Meso_1610 Meso_3622 Meso_3622 Meso_3726 Meso_3726 Meso_3756 Meso_3756 Meso_2050 Meso_2050 Meso_1945 Meso_1945 Meso_2052 Meso_2052
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_1610PFAM: amidohydrolase 2; KEGG: bja:blr1125 hypothetical protein. (288 aa)
Meso_3622PFAM: fumarate lyase; KEGG: bja:bll7942 probable 3-carboxy-cis,cis-muconate cycloisomerase. (456 aa)
Meso_3726PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein. (283 aa)
Meso_3756PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein. (296 aa)
Meso_2050TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: sme:SMb20577 protocatechuate 3,4-dioxygenase, beta subunit. (246 aa)
Meso_1945PFAM: amidohydrolase 2; KEGG: atc:AGR_L_3341 hypothetical protein. (287 aa)
Meso_2052TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: mlo:mlr7211 3-carboxy-cis,cis-muconate cycloisomerase. (354 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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