STRINGSTRING
Meso_1445 Meso_1445 Meso_1399 Meso_1399 Meso_1342 Meso_1342 Meso_1317 Meso_1317 nrdR nrdR Meso_0923 Meso_0923 Meso_4098 Meso_4098 Meso_0756 Meso_0756 Meso_0611 Meso_0611 Meso_0608 Meso_0608 Meso_0607 Meso_0607 Meso_0558 Meso_0558 Meso_0483 Meso_0483 Meso_0381 Meso_0381 flbT flbT Meso_0210 Meso_0210 Meso_0145 Meso_0145 Meso_0128 Meso_0128 Meso_0011 Meso_0011 Meso_0810 Meso_0810 Meso_4097 Meso_4097 Meso_4073 Meso_4073 hrcA hrcA Meso_3999 Meso_3999 Meso_3923 Meso_3923 Meso_3679 Meso_3679 Meso_3625 Meso_3625 rsfS rsfS Meso_3404 Meso_3404 Meso_3402 Meso_3402 Meso_3353 Meso_3353 Meso_3334 Meso_3334 Meso_3287 Meso_3287 Meso_3117 Meso_3117 Meso_2988 Meso_2988 Meso_2976 Meso_2976 Meso_2947 Meso_2947 Meso_2620 Meso_2620 Meso_2463 Meso_2463 Meso_2454 Meso_2454 Meso_2084 Meso_2084 Meso_2054 Meso_2054 Meso_2041 Meso_2041 Meso_2033 Meso_2033 Meso_1981 Meso_1981 Meso_1963 Meso_1963 Meso_1754 Meso_1754 Meso_1742 Meso_1742 Meso_1694 Meso_1694 lexA lexA Meso_1495 Meso_1495
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_1445TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bmb:BruAb2_0662 RrF2 family protein. (153 aa)
Meso_1399PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: mlo:mlr0740 putative multiple antibiotic resistance protein. (217 aa)
Meso_1342PFAM: TadE-like; KEGG: mlo:mll7596 hypothetical protein. (175 aa)
Meso_1317PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mlr1178 alcohol dehydrogenase. (342 aa)
nrdRRibonucleotide reductase regulator NrdR-like protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (154 aa)
Meso_0923PFAM: Appr-1-p processing; KEGG: mlo:mll7730 hypothetical protein. (174 aa)
Meso_4098KEGG: mlo:mll5590 hypothetical protein. (205 aa)
Meso_0756PFAM: protein of unknown function DUF156; KEGG: sme:SMc04168 hypothetical protein. (90 aa)
Meso_0611KEGG: sme:SMa1579 hypothetical protein. (427 aa)
Meso_0608PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein. (580 aa)
Meso_0607PFAM: TadE-like; KEGG: sme:SMa1572 hypothetical protein. (140 aa)
Meso_0558PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_2932 protein of unknown function DUF156. (96 aa)
Meso_0483PFAM: regulatory protein, TetR; KEGG: jan:Jann_2034 transcriptional regulator, TetR family. (225 aa)
Meso_0381TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mlo:mll4839 hypothetical protein. (251 aa)
flbTFlagellar FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation. (145 aa)
Meso_0210Putative prophage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: nar:Saro_3015 putative prophage repressor. (218 aa)
Meso_0145Putative transmembrane anti-sigma factor; KEGG: atc:AGR_C_2736 hypothetical protein. (256 aa)
Meso_0128PFAM: regulatory protein, TetR; KEGG: rru:Rru_A1794 transcriptional regulator, TetR family. (235 aa)
Meso_0011Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake. (242 aa)
Meso_0810Transcriptional regulator, MarR family; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein, MarR; KEGG: bja:blr2971 transcriptional regulatory protein. (184 aa)
Meso_4097PFAM: TadE-like; KEGG: bja:blr3942 hypothetical protein. (189 aa)
Meso_4073PFAM: regulatory protein, TetR; KEGG: mlo:mlr4593 transcriptional regulator. (245 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (356 aa)
Meso_3999KEGG: sme:SMc04109 putative response regulator protein. (422 aa)
Meso_3923Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: atc:AGR_C_630 hypothetical protein. (140 aa)
Meso_3679PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mlr3212 dehydrogenase (zinc-binding alcohol dehydrogenase, NADPH quinone oxidoreductase, oxidoreductase). (329 aa)
Meso_3625Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ppu:PP2066 transcriptional regulator, GntR family. (239 aa)
rsfSIojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (150 aa)
Meso_3404PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr3870 ABC transporter, ATP-binding protein. (604 aa)
Meso_3402GumN; PFAM: GumN; KEGG: atc:AGR_C_4767 hypothetical protein. (346 aa)
Meso_3353PFAM: protein of unknown function UPF0005; KEGG: ret:RHE_CH03940 hypothetical protein; Belongs to the BI1 family. (248 aa)
Meso_3334PFAM: regulatory protein, TetR; KEGG: mlo:mlr3838 transcriptional regulator. (202 aa)
Meso_3287PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rso:RSc1203 NADPH quinone oxidoreductase, putative. (327 aa)
Meso_3117Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake. (234 aa)
Meso_2988Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family. (241 aa)
Meso_2976Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family. (242 aa)
Meso_2947PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pae:PA5234 quinone oxidoreductase. (335 aa)
Meso_2620Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: mlo:mll3646 hypothetical protein. (194 aa)
Meso_2463Transcriptional regulator, MarR family; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein, MarR; KEGG: bmb:BruAb2_1099 transcriptional regulator, MarR family. (154 aa)
Meso_2454PFAM: regulatory protein, TetR; KEGG: fra:Francci3_3148 transcriptional regulator, TetR family. (185 aa)
Meso_2084KEGG: mlo:mlr7847 hypothetical protein. (549 aa)
Meso_2054TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 Helix-turn-helix, type 11; KEGG: mlo:mll1642 probable transcriptional regulator. (169 aa)
Meso_2041PFAM: regulatory protein, TetR Tetracycline transcriptional regulator YcdC-like-like; KEGG: mlo:mlr1634 probable transcriptional regulator. (211 aa)
Meso_2033PFAM: ABC transporter related; SMART: ATPase; KEGG: bms:BR1456 ABC transporter, ATP-binding protein. (549 aa)
Meso_1981PFAM: regulatory protein, TetR; KEGG: mlo:mlr1472 probable transcriptional regulator. (227 aa)
Meso_1963Regulatory inactivation of DnaA Hda protein; KEGG: mlo:mlr7968 hypothetical protein; Belongs to the DnaA family. (233 aa)
Meso_1754PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr7932 ABC transporter, ATP-binding component. (625 aa)
Meso_1742TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mlo:mll1446 hypothetical protein. (259 aa)
Meso_1694PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mll0505 quinone oxidoreductase. (325 aa)
lexASOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (236 aa)
Meso_1495Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02745 probable transcriptional regulator protein, TetR family. (219 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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