STRINGSTRING
Meso_1046 Meso_1046 Meso_1178 Meso_1178 Meso_1615 Meso_1615 Meso_2201 Meso_2201 Meso_2280 Meso_2280 Meso_3527 Meso_3527
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_1046PFAM: Cl- channel, voltage gated; KEGG: mlo:mll4356 chloride channel protein. (449 aa)
Meso_1178PFAM: Ion transport protein Ion transport 2; KEGG: mlo:mll0869 ion transporter. (267 aa)
Meso_1615PFAM: TrkA-N TrkA-C; KEGG: bmb:BruAb1_1120 TrkA, potassium uptake protein TrkA. (458 aa)
Meso_2201Peptidase M50; PFAM: CBS domain containing protein peptidase M50; KEGG: sme:SMb20925 hypothetical protein; Belongs to the peptidase M50B family. (375 aa)
Meso_2280KEGG: mlo:mll6598 hypothetical protein. (142 aa)
Meso_3527KEGG: sme:SMc01448 hypothetical protein. (145 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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