STRINGSTRING
rpsL rpsL Meso_0032 Meso_0032 infA infA Meso_0204 Meso_0204 Meso_0317 Meso_0317 pheT pheT Meso_0737 Meso_0737 ccmE ccmE recO recO Meso_1098 Meso_1098 aspS aspS Meso_1150 Meso_1150 rnr rnr Meso_1397 Meso_1397 Meso_1592 Meso_1592 Meso_1593 Meso_1593 rpsQ rpsQ rplB rplB recG recG rne rne Meso_1733 Meso_1733 Meso_1909 Meso_1909 ligA ligA Meso_2134 Meso_2134 Meso_2135 Meso_2135 Meso_2147 Meso_2147 Meso_2302 Meso_2302 Meso_2700 Meso_2700 Meso_2710 Meso_2710 Meso_2736 Meso_2736 Meso_2770 Meso_2770 Meso_2858 Meso_2858 ruvA ruvA efp efp Meso_3306 Meso_3306 Meso_3369 Meso_3369 rho rho Meso_3556 Meso_3556 Meso_3606 Meso_3606 Meso_3768 Meso_3768 Meso_3780 Meso_3780 Meso_3832 Meso_3832 nusA nusA pnp pnp
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsLSSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. (123 aa)
Meso_0032PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: mlo:mll5481 probable DNA ligase. (536 aa)
infABacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa)
Meso_0204TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mlo:mll0743 single-strand DNA-binding protein. (145 aa)
Meso_0317PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: mlo:mll2881 hypothetical protein. (772 aa)
pheTTIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mlo:mll5053 phenylalanine-tRNA ligase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (801 aa)
Meso_073723S rRNA m(5)U-1939 methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM (Uracil-5)-methyltransferase; KEGG: mlo:mlr7480 RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (413 aa)
ccmECcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (144 aa)
recODNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (248 aa)
Meso_1098Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_PF00090 probable sugar ABC transporter, ATP-binding protein; TC 3.A.1.1.-. (352 aa)
aspSaspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (594 aa)
Meso_1150ATP-dependent DNA ligase LigD polymerase module; PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: atc:AGR_L_502 probable ATP-dependent DNA ligase PA2138. (845 aa)
rnrRNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (765 aa)
Meso_1397Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (160 aa)
Meso_1592Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: mlo:mll0708 ATP-binding protein of sugar ABC transporter; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (360 aa)
Meso_1593Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0706 ATP-binding protein of sugar ABC transporter; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (358 aa)
rpsQSSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (80 aa)
rplBLSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (702 aa)
rneRNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (868 aa)
Meso_1733PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:mlr0168 cold shock protein. (197 aa)
Meso_1909PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:msl9578 cold shock protein. (69 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (703 aa)
Meso_2134PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:msr2657 probable cold shock protein. (70 aa)
Meso_2135PFAM: Cold-shock protein, DNA-binding Ribonuclease B, OB region-like; SMART: Cold shock protein; KEGG: mlo:msr2658 probable cold shock protein. (70 aa)
Meso_2147TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding region; KEGG: sme:SMc04456 putative chaperone protein. (115 aa)
Meso_2302Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: tma:TM1276 putative multiple sugar transport system ATP-binding protein; TC 3.A.1.1.-. (357 aa)
Meso_2700PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: mlo:mll9685 probable DNA ligase. (365 aa)
Meso_2710Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: sme:SMc02869 putative ATP-binding ABC transporter protein; TC 3.A.1.1.-. (333 aa)
Meso_2736PFAM: protein of unknown function DUF107; KEGG: mlo:mlr3022 hypothetical protein. (153 aa)
Meso_2770PFAM: Cold-shock protein, DNA-binding; KEGG: ava:Ava_4090 cold-shock DNA-binding domain protein. (194 aa)
Meso_2858Alpha-glucoside transport system ATP-binding protein; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: sme:SMc03065 alpha-glucosides transport ATP-binding ABC transporter protein. (362 aa)
ruvAHolliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (206 aa)
efpTranslation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (187 aa)
Meso_3306PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ret:RHE_CH00560 cold shock protein. (69 aa)
Meso_3369PFAM: protein of unknown function DUF107; KEGG: sme:SMb20990 probable membrane protein necessary for nodulation competitiveness. (488 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (429 aa)
Meso_3556Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: rsp:RSP_1445 ABC sugar transporter, ATPase subunit; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily. (370 aa)
Meso_3606SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (569 aa)
Meso_3768Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_PF00090 probable sugar ABC transporter, ATP-binding protein; TC 3.A.1.1.-. (351 aa)
Meso_3780PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: mlo:mll4923 unknown protein. (332 aa)
Meso_3832Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (132 aa)
nusANusA antitermination factor; Participates in both transcription termination and antitermination. (534 aa)
pnp3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (715 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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