STRINGSTRING
Meso_2955 Meso_2955 ntrC ntrC Meso_2731 Meso_2731
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_2955Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: reu:Reut_B3890 helix-turn-helix, fis-type. (559 aa)
ntrCNitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (486 aa)
Meso_2731Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: mlo:mll3001 response regulatory protein. (505 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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