STRINGSTRING
Meso_0622 Meso_0622 Meso_3767 Meso_3767 Meso_2944 Meso_2944 Meso_1599 Meso_1599 Meso_0573 Meso_0573 Meso_1484 Meso_1484 Meso_0590 Meso_0590
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0622PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (340 aa)
Meso_3767PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: rpb:RPB_1140 transcriptional regulator, AraC family. (371 aa)
Meso_2944PFAM: ThiJ/PfpI; KEGG: bbr:BB2338 probable transcriptional regulator. (378 aa)
Meso_1599PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (361 aa)
Meso_0573PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: bur:Bcep18194_A5985 transcriptional regulator, AraC family. (342 aa)
Meso_1484TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: bja:bll8044 proteinase. (186 aa)
Meso_0590Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: atc:AGR_L_1109 hypothetical protein. (347 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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