STRINGSTRING
Meso_0021 Meso_0021 Meso_0487 Meso_0487 Meso_1049 Meso_1049 Meso_2516 Meso_2516 Meso_2946 Meso_2946 Meso_3035 Meso_3035 Meso_4079 Meso_4079
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_0021PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase. (740 aa)
Meso_0487PFAM: UDP-glucose/GDP-mannose dehydrogenase 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ret:RHE_PE00044 probable UDP-glucose 6-dehydrogenase/GDP-mannose 6-dehydrogenase protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (447 aa)
Meso_1049PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein. (294 aa)
Meso_2516PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: vpa:VPA1118 3-hydroxyisobutyrate dehydrogenase. (292 aa)
Meso_2946PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ppu:PP3282 3-hydroxyacyl-CoA dehydrogenase PaaC. (485 aa)
Meso_3035PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mlo:mlr3490 3-hydroxybutyryl-CoA dehydrogenase. (293 aa)
Meso_4079PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mlo:mll5489 putative 2-hydroxyacid dehydrogenase. (318 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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