STRINGSTRING
Meso_1044 Meso_1044 Meso_1428 Meso_1428 Meso_1509 Meso_1509 ackA ackA Meso_2974 Meso_2974 Meso_3422 Meso_3422
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Meso_1044Gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: rsp:RSP_3272 gamma-glutamyltranspeptidase. (586 aa)
Meso_1428TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding alanine dehydrogenase/PNT-like; KEGG: mlo:mll9089 alanine dehydrogenase; Belongs to the AlaDH/PNT family. (371 aa)
Meso_1509Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: rpa:RPA2331 possible gamma-glutamyltranspeptidase. (534 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (390 aa)
Meso_2974PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mlo:mlr1729 ornithine cyclodeaminase. (334 aa)
Meso_3422PFAM: NAD-glutamate dehydrogenase; KEGG: mlo:mll4104 hypothetical protein. (1586 aa)
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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