(6 nodes) Caprolactam degradation network (Chelativorans sp. BNC1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Meso_0021	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase. (740 aa)
	Meso_1524	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding. (706 aa)
	Meso_2945	PFAM: Alpha/beta hydrolase fold-3; KEGG: ret:RHE_CH01714 putative esterase/lipase/thioesterase family protein. (287 aa)
	Meso_3752	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
	Meso_3770	Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bja:bll6697 putative glconolactonase. (323 aa)
	Meso_4101	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Meso_0021	Meso_1524	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	0.955
Meso_0021	Meso_3752	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.924
Meso_0021	Meso_4101	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.923
Meso_1524	Meso_0021	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.955
Meso_1524	Meso_3752	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.935
Meso_1524	Meso_4101	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.924
Meso_3752	Meso_0021	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.924
Meso_3752	Meso_1524	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	0.935
Meso_3752	Meso_4101	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.922
Meso_4101	Meso_0021	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.	0.923
Meso_4101	Meso_1524	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding.	0.924
Meso_4101	Meso_3752	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bja:blr3445 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.922