STRINGSTRING
recB recB recC recC Krad_1172 Krad_1172 Krad_1407 Krad_1407 Krad_1631 Krad_1631 Krad_1855 Krad_1855 Krad_2515 Krad_2515 Krad_4408 Krad_4408 Krad_4414 Krad_4414 Krad_0531 Krad_0531
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
recBExodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...] (1125 aa)
recCExodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (1158 aa)
Krad_1172PFAM: UvrD/REP helicase; KEGG: tfu:Tfu_0524 putative DNA helicase; Belongs to the helicase family. UvrD subfamily. (1128 aa)
Krad_1407PFAM: protein of unknown function UPF0102; KEGG: sco:SCO5602 predicted endonuclease; Belongs to the UPF0102 family. (122 aa)
Krad_1631PFAM: protein of unknown function DUF820; KEGG: nca:Noca_1197 protein of unknown function DUF820. (184 aa)
Krad_1855KEGG: sma:SAV6672 putative RecB family exonuclease. (294 aa)
Krad_2515PFAM: restriction endonuclease; KEGG: sma:SAV1059 hypothetical protein. (237 aa)
Krad_4408PFAM: UvrD/REP helicase; KEGG: sru:SRU_1806 probable ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily. (1123 aa)
Krad_4414PFAM: DNA mismatch endonuclease vsr; KEGG: rha:RHA1_ro04148 probable very short patch repair protein. (152 aa)
Krad_0531PFAM: protein of unknown function DUF820. (178 aa)
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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